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The map label for this gene is xynZ [H]

Identifier: 16127272

GI number: 16127272

Start: 3258649

End: 3259641

Strand: Direct

Name: xynZ [H]

Synonym: CC_3042

Alternate gene names: 16127272

Gene position: 3258649-3259641 (Clockwise)

Preceding gene: 16127271

Following gene: 16127273

Centisome position: 81.12

GC content: 68.98

Gene sequence:

>993_bases
GTGCAGAGCCAGCCCGTCGCCGACACGCCTCTGAAGTCGATCGCCTCGACCCCGGTCGGCGCCTGCCTGCAGCGCCACCA
GCTGGACGATCCCGCCTTCGCCGCCCTGCTCACCCGCCACTACAGCCAGATCACGGCCGAGTGGGAAATGAAGATGGAGT
ACATCCTCCAGGACGACGGGCGGTTCCGGTTCGACCGGCCCGACGCCATCGCCGACTTCGCCCGCCGCCACGGCCTGCGG
CTGCATGGCCACGCCCTGATCTGGTACAGTCAGGTGATGCCCGCCTTCCGCGCCCTGGACGGCCAGGGCAAGCGGTTCGC
CGACGCCTATCGCAACTACATCCTGGCGGTCGCGGGCCGCTATCGCGGGCTGGCGGCCAGCTGGGACGTCATTAACGAGG
CGGTCGACGACAACGGCGTCGACCTGCGACGCTCGGCCTGGACCGACAATCTGGGCGTCGATGAGCACATGATCCTGGCG
TTTCACCACGCCAAGGAGGCCGACCCCGACGCGGTCCTGTTCATCAACGACTACAATCTCGAGAACAATCCGACCAAGCG
GGCGACCTTCCTGCGGATGGTCGAACGGCTGCTGAAGGCCGGCGCGCCGATCGGCGGCATCGGCACCCAGAGCCATCTGG
GTCTGGACTTCACCCCGCCGGGGATGTGCCGGATCGCCCTGCGCGATCTGGCCAGCCTTGGCCTGCCGATCCATGTCTCC
GAGCTGGACATCTCCTTCGGCGACAAGCCAGAAACCGCCCCCTTGCCGAAGCTGCTGAGCCGCCAGGCCGACCTCGCCCG
CGAGCTGGCGCAGGCCTATATGGACCTGCCGCGCGCGCAGCGGTTCGCCTTCACCGTCTGGGGCGTGCGCGACCGGGACT
CCTGGCTGCGCGGCGCGAACGGCGAGCGCCCCTGGGAGCACCCCTTGCCCCTCGATGACGCCGGCCAGCCCAAGCCGATG
TTCCAGGCCCTGGCTGAGGTGCTGTCGGGGTAG

Upstream 100 bases:

>100_bases
AGCATCCGCCGCGCCGCCGTCGGCGGTCGGTAAGGTGTCACGGCTCACCCGCCGCAGCGCGATCGCCTCCGCCCTGGCGC
TGAGCGCCTGCGCGCGTGAG

Downstream 100 bases:

>100_bases
AGGGCGCGGAGCGCTCTGGCGCTATCCCAAGTCCATCCCTGGTGTCGTTCGGGGATTAAGTGCACTGTCACCGTAATCCT
GAGCCTGTCACCGTAATCCT

Product: endo-1,4-beta-xylanase

Products: NA

Alternate protein names: Xylanase Z; 1,4-beta-D-xylan xylanohydrolase Z [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MQSQPVADTPLKSIASTPVGACLQRHQLDDPAFAALLTRHYSQITAEWEMKMEYILQDDGRFRFDRPDAIADFARRHGLR
LHGHALIWYSQVMPAFRALDGQGKRFADAYRNYILAVAGRYRGLAASWDVINEAVDDNGVDLRRSAWTDNLGVDEHMILA
FHHAKEADPDAVLFINDYNLENNPTKRATFLRMVERLLKAGAPIGGIGTQSHLGLDFTPPGMCRIALRDLASLGLPIHVS
ELDISFGDKPETAPLPKLLSRQADLARELAQAYMDLPRAQRFAFTVWGVRDRDSWLRGANGERPWEHPLPLDDAGQPKPM
FQALAEVLSG

Sequences:

>Translated_330_residues
MQSQPVADTPLKSIASTPVGACLQRHQLDDPAFAALLTRHYSQITAEWEMKMEYILQDDGRFRFDRPDAIADFARRHGLR
LHGHALIWYSQVMPAFRALDGQGKRFADAYRNYILAVAGRYRGLAASWDVINEAVDDNGVDLRRSAWTDNLGVDEHMILA
FHHAKEADPDAVLFINDYNLENNPTKRATFLRMVERLLKAGAPIGGIGTQSHLGLDFTPPGMCRIALRDLASLGLPIHVS
ELDISFGDKPETAPLPKLLSRQADLARELAQAYMDLPRAQRFAFTVWGVRDRDSWLRGANGERPWEHPLPLDDAGQPKPM
FQALAEVLSG
>Mature_330_residues
MQSQPVADTPLKSIASTPVGACLQRHQLDDPAFAALLTRHYSQITAEWEMKMEYILQDDGRFRFDRPDAIADFARRHGLR
LHGHALIWYSQVMPAFRALDGQGKRFADAYRNYILAVAGRYRGLAASWDVINEAVDDNGVDLRRSAWTDNLGVDEHMILA
FHHAKEADPDAVLFINDYNLENNPTKRATFLRMVERLLKAGAPIGGIGTQSHLGLDFTPPGMCRIALRDLASLGLPIHVS
ELDISFGDKPETAPLPKLLSRQADLARELAQAYMDLPRAQRFAFTVWGVRDRDSWLRGANGERPWEHPLPLDDAGQPKPM
FQALAEVLSG

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR016134
- InterPro:   IPR002105
- InterPro:   IPR006584
- InterPro:   IPR018242
- InterPro:   IPR018247
- InterPro:   IPR000801
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF03422 CBM_6; PF00404 Dockerin_1; PF00756 Esterase; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 36945; Mature: 36945

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSQPVADTPLKSIASTPVGACLQRHQLDDPAFAALLTRHYSQITAEWEMKMEYILQDDG
CCCCCCCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
RFRFDRPDAIADFARRHGLRLHGHALIWYSQVMPAFRALDGQGKRFADAYRNYILAVAGR
CEECCCCHHHHHHHHHCCCEEECCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YRGLAASWDVINEAVDDNGVDLRRSAWTDNLGVDEHMILAFHHAKEADPDAVLFINDYNL
HCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCC
ENNPTKRATFLRMVERLLKAGAPIGGIGTQSHLGLDFTPPGMCRIALRDLASLGLPIHVS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
ELDISFGDKPETAPLPKLLSRQADLARELAQAYMDLPRAQRFAFTVWGVRDRDSWLRGAN
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCHHHHHCCCC
GERPWEHPLPLDDAGQPKPMFQALAEVLSG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MQSQPVADTPLKSIASTPVGACLQRHQLDDPAFAALLTRHYSQITAEWEMKMEYILQDDG
CCCCCCCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
RFRFDRPDAIADFARRHGLRLHGHALIWYSQVMPAFRALDGQGKRFADAYRNYILAVAGR
CEECCCCHHHHHHHHHCCCEEECCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YRGLAASWDVINEAVDDNGVDLRRSAWTDNLGVDEHMILAFHHAKEADPDAVLFINDYNL
HCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCC
ENNPTKRATFLRMVERLLKAGAPIGGIGTQSHLGLDFTPPGMCRIALRDLASLGLPIHVS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
ELDISFGDKPETAPLPKLLSRQADLARELAQAYMDLPRAQRFAFTVWGVRDRDSWLRGAN
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCHHHHHCCCC
GERPWEHPLPLDDAGQPKPMFQALAEVLSG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3139632; 7664125 [H]