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The map label for this gene is ynaJ [H]

Identifier: 16127260

GI number: 16127260

Start: 3245019

End: 3246410

Strand: Direct

Name: ynaJ [H]

Synonym: CC_3030

Alternate gene names: 16127260

Gene position: 3245019-3246410 (Clockwise)

Preceding gene: 16127259

Following gene: 16127261

Centisome position: 80.78

GC content: 67.89

Gene sequence:

>1392_bases
GTGGCGGCGATCCGCGCTGAGCGCGCAAACAGCGGCCAAGGGCCCTTGGGAACCTGGCGCCTGGTGGCCTTTGCGCTGCC
CTGCGTTCCGGTGGCGGCGATGCTCATGCCCGTCGTCGTCTATCTGCCCAACTACTACGCCACGGATCTGGGCGTTGACC
TGACGGCGATCGGACTGGCCTTCGGGGTCGTTCGCCTGTTCGACCTGTGGCTGGATCCGACCCTGGGGTTCCTGATCGAC
AGGACCAACACGCGCTTTGGCCGGTTCAAGCCCTGGCTCGTCGCCGGTCTGCCCATCGCCGTCGTTTCGGTCTGGATGCT
GTTCATGGCGCGGCCGGGCATCGACGGAAACTATATCCTGTTCTGGCTGGTGTTGGGGTTCCTGGGCCAGTCCATGGCGA
CCATGGCGCATGTCACCTGGGCGGCCAGGCTGGCGCCGGAATATGGGCAGCGCGCGCGCGTGTTCAGCTGGTGGCACGGC
TTCACCGTCGTGGGCATGCTGATCGTGCTGGCCATGCCGCCGCTGATGAAGCTCGGCTTCGGGCTCGACTACGGGCAGGG
CGTGCGGGCGATGGGCTGGTTCGTGGTGCTGAGCCTGCCTGTGGCCGCTCTCCTGGCGCTGTTCGCCGTGCACGAGCCGC
CGTCGCCGCCGAACATCACGTCCACCACCTGGCGTCACTATTGGGATCTGATCCGTCGGCCGTCGATCCTGCGCTTGCTC
GTGTCGGACATTCTTCTGGGGACGGGCCCGGTCATCGCCGGCACCCTGTTCTTCTTCTATTTCGACGCCATTCGCGGCTG
GGACCGTTCCGAAGCCGGCCTGCTGCTGCTGCTTTATTTCACCGGCGCCCTGCTGGGCGCGCCCCTCTGGGGTCGTCTGG
GACAGGCGATCGGCAAGCATCGCGCCTTGGCCATCGCTTCGGCGGCCTATGCCGTAGCGCAGCTCTCCGTGCTGATCGCG
CCAGAGGGGCTGGCCTGGGGGATCGTGACCATGACCCTGGCCGGCCTGCCCTACAGCGCAGGGCCCATCCTGCTGCGCGC
CATGATGGCCGACCTGGGCGACGAGGAGCGCCTCAGGAGCGGCGTGGATCGCAGCGGTCTGATGTTCGGTTTGCTGAGCG
GGGTCGTGAAGATCGGCTCGGCCATCGCGGTGTTCGCCGCCGTCAGCGCGCTGGACCTGTTTGGGTTCAAGGCGGACCTT
GGGGCTGCAAATACGCCGCTGGCGCTGGGCGTGCTCTCGGTCAGCTTCGCCGTCGTGCCCGCGCTCCTGACGCTGGCGGG
CGCCGCCCTGATCACGGGTCACCCCCTGGACAAGGCGGCGCATGACGCCATCCGCAAGGCGCTGGAGGCGCGTGACGCCG
CGCAGAACACCGCGGAGACATCCGGGCGATAG

Upstream 100 bases:

>100_bases
TGATCTCGCGCCGCATCAAGCTGGAGGACGTCAACTCGGCCTTCGACGAGCTCAAGCGCGGCGAGCTGGCGCGATCGGTG
ATCGTGTTTGACTGAGGGGA

Downstream 100 bases:

>100_bases
CCCCCTGTCACACGCCCGCTAAACACCGCATGCTACCTCCGGCCGCAGTTCACCGGAGTCCCGCCATGCCCCATCTCGAC
CGCCGCAGCCTGCTGGCCGC

Product: sodium:galactoside symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MAAIRAERANSGQGPLGTWRLVAFALPCVPVAAMLMPVVVYLPNYYATDLGVDLTAIGLAFGVVRLFDLWLDPTLGFLID
RTNTRFGRFKPWLVAGLPIAVVSVWMLFMARPGIDGNYILFWLVLGFLGQSMATMAHVTWAARLAPEYGQRARVFSWWHG
FTVVGMLIVLAMPPLMKLGFGLDYGQGVRAMGWFVVLSLPVAALLALFAVHEPPSPPNITSTTWRHYWDLIRRPSILRLL
VSDILLGTGPVIAGTLFFFYFDAIRGWDRSEAGLLLLLYFTGALLGAPLWGRLGQAIGKHRALAIASAAYAVAQLSVLIA
PEGLAWGIVTMTLAGLPYSAGPILLRAMMADLGDEERLRSGVDRSGLMFGLLSGVVKIGSAIAVFAAVSALDLFGFKADL
GAANTPLALGVLSVSFAVVPALLTLAGAALITGHPLDKAAHDAIRKALEARDAAQNTAETSGR

Sequences:

>Translated_463_residues
MAAIRAERANSGQGPLGTWRLVAFALPCVPVAAMLMPVVVYLPNYYATDLGVDLTAIGLAFGVVRLFDLWLDPTLGFLID
RTNTRFGRFKPWLVAGLPIAVVSVWMLFMARPGIDGNYILFWLVLGFLGQSMATMAHVTWAARLAPEYGQRARVFSWWHG
FTVVGMLIVLAMPPLMKLGFGLDYGQGVRAMGWFVVLSLPVAALLALFAVHEPPSPPNITSTTWRHYWDLIRRPSILRLL
VSDILLGTGPVIAGTLFFFYFDAIRGWDRSEAGLLLLLYFTGALLGAPLWGRLGQAIGKHRALAIASAAYAVAQLSVLIA
PEGLAWGIVTMTLAGLPYSAGPILLRAMMADLGDEERLRSGVDRSGLMFGLLSGVVKIGSAIAVFAAVSALDLFGFKADL
GAANTPLALGVLSVSFAVVPALLTLAGAALITGHPLDKAAHDAIRKALEARDAAQNTAETSGR
>Mature_462_residues
AAIRAERANSGQGPLGTWRLVAFALPCVPVAAMLMPVVVYLPNYYATDLGVDLTAIGLAFGVVRLFDLWLDPTLGFLIDR
TNTRFGRFKPWLVAGLPIAVVSVWMLFMARPGIDGNYILFWLVLGFLGQSMATMAHVTWAARLAPEYGQRARVFSWWHGF
TVVGMLIVLAMPPLMKLGFGLDYGQGVRAMGWFVVLSLPVAALLALFAVHEPPSPPNITSTTWRHYWDLIRRPSILRLLV
SDILLGTGPVIAGTLFFFYFDAIRGWDRSEAGLLLLLYFTGALLGAPLWGRLGQAIGKHRALAIASAAYAVAQLSVLIAP
EGLAWGIVTMTLAGLPYSAGPILLRAMMADLGDEERLRSGVDRSGLMFGLLSGVVKIGSAIAVFAAVSALDLFGFKADLG
AANTPLALGVLSVSFAVVPALLTLAGAALITGHPLDKAAHDAIRKALEARDAAQNTAETSGR

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Escherichia coli, GI1786466, Length=442, Percent_Identity=26.2443438914027, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790561, Length=398, Percent_Identity=24.3718592964824, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 49568; Mature: 49437

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AAIRAERANSGQGPLGTWRLVAFALPCVPVAAMLMPVVVYLPNYYATDLGVDLTAIGLA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHH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HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]