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The map label for this gene is rpoE [H]

Identifier: 16127115

GI number: 16127115

Start: 3106083

End: 3106652

Strand: Direct

Name: rpoE [H]

Synonym: CC_2883

Alternate gene names: 16127115

Gene position: 3106083-3106652 (Clockwise)

Preceding gene: 16127113

Following gene: 16127116

Centisome position: 77.32

GC content: 66.67

Gene sequence:

>570_bases
ATGGACCAGCAGACTCAGAAGAGCTTCGAACGTGACCTGATCGCCTTGATCCCCCACCTGCGGGCCTTCGCCCGCTCGCT
GTGCGGCAATGCGGCGATGGCCGATGATCTGGCGCAGGAGGCCGTGGCCAAGGCCTGGGCCAGCCGGGGCAGTTTCACCA
TGGGCACCAACATGAAGGCCTGGACCTTCATGATCCTGCGCAACCAGTTCTACTCCGACAAGCGCCGCAGCTGGCGCTCG
GTGGCGCTGGATCAGGAGATGGCCGAGCGCACCCTGGTGGCCAACACCAATTTCGACAGCGCCATCGCGCTCGACGACCT
GCGTCAGGCCATGTTGATGCTGCCCGAGAACCAGCGCGAGGCGCTGATCCTGATCGGGGCCGGCGGCTTCTCGTATGAAG
AGGCGGCCCGGATGATCGGGGTGGCCATCGGCACGGTGAAGAGCCGCGTCAGCCGCGCCCGCGCCGAGCTGGTCCAGCTG
TTCGAAACCGGCCACTACCCCCGCGACGGCAAGCCGGCGGGCCAGGCCATGGCTTCGATGCTGCGCGATCTGGAACGGCT
GGCGGCATAA

Upstream 100 bases:

>100_bases
CGGAAGGACGACGCTCTCCCCGGCCGCCATTTGACCCTCCCCCCCCCATGGAACCTTCGCCGCTGCGGGCCGTTGTTAAG
GTCGCCGAGGAGGCGCCCAG

Downstream 100 bases:

>100_bases
AGCCCTTTAGCTTTGGAGGGAGCCATCCAGAGCGTTCAAAAAGGGCTCTAGATGTTTGATCCTAGAACCTGCTCACCCCG
TTGAGAGGTTTGCGTCCAAA

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MDQQTQKSFERDLIALIPHLRAFARSLCGNAAMADDLAQEAVAKAWASRGSFTMGTNMKAWTFMILRNQFYSDKRRSWRS
VALDQEMAERTLVANTNFDSAIALDDLRQAMLMLPENQREALILIGAGGFSYEEAARMIGVAIGTVKSRVSRARAELVQL
FETGHYPRDGKPAGQAMASMLRDLERLAA

Sequences:

>Translated_189_residues
MDQQTQKSFERDLIALIPHLRAFARSLCGNAAMADDLAQEAVAKAWASRGSFTMGTNMKAWTFMILRNQFYSDKRRSWRS
VALDQEMAERTLVANTNFDSAIALDDLRQAMLMLPENQREALILIGAGGFSYEEAARMIGVAIGTVKSRVSRARAELVQL
FETGHYPRDGKPAGQAMASMLRDLERLAA
>Mature_189_residues
MDQQTQKSFERDLIALIPHLRAFARSLCGNAAMADDLAQEAVAKAWASRGSFTMGTNMKAWTFMILRNQFYSDKRRSWRS
VALDQEMAERTLVANTNFDSAIALDDLRQAMLMLPENQREALILIGAGGFSYEEAARMIGVAIGTVKSRVSRARAELVQL
FETGHYPRDGKPAGQAMASMLRDLERLAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21048; Mature: 21048

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQQTQKSFERDLIALIPHLRAFARSLCGNAAMADDLAQEAVAKAWASRGSFTMGTNMKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEECCCCHH
WTFMILRNQFYSDKRRSWRSVALDQEMAERTLVANTNFDSAIALDDLRQAMLMLPENQRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC
ALILIGAGGFSYEEAARMIGVAIGTVKSRVSRARAELVQLFETGHYPRDGKPAGQAMASM
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LRDLERLAA
HHHHHHHCC
>Mature Secondary Structure
MDQQTQKSFERDLIALIPHLRAFARSLCGNAAMADDLAQEAVAKAWASRGSFTMGTNMKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEECCCCHH
WTFMILRNQFYSDKRRSWRSVALDQEMAERTLVANTNFDSAIALDDLRQAMLMLPENQRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC
ALILIGAGGFSYEEAARMIGVAIGTVKSRVSRARAELVQLFETGHYPRDGKPAGQAMASM
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LRDLERLAA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]