BacMap

Definition	Caulobacter crescentus CB15 chromosome, complete genome.
Accession	NC_002696
Length	4,016,947

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The map label for this gene is yusZ [H]

Identifier: 16127093

GI number: 16127093

Start: 3087567

End: 3088418

Strand: Direct

Name: yusZ [H]

Synonym: CC_2861

Alternate gene names: 16127093

Gene position: 3087567-3088418 (Clockwise)

Preceding gene: 16127092

Following gene: 16127097

Centisome position: 76.86

GC content: 69.84

Gene sequence:

>852_bases
ATGGCCCAGACAAAATCCGTCGTGATCACCGGCGTCTCGACCGGCATCGGCCATGCGGCGACCAAGGTGTTGATCGGCAA
GGGCTTTCACGTCTTCGGCAGCGTCCGCAAGGCCGCCGACGGCGAGCGGCTGAAAGCCGAGTTCGGCGACGCCTTCACCC
CGCTGGTCTTCGACGTCGTCGACGAGGCCGCCGTGCGCGCGGGCGCGCGGCAGGTCGAGGCGGCGCTGGGCGGGGCGACC
CTGGCGGGGCTCGTGAACAACGCCGGGATCGCGGTGGCCGGGCCGCTGCTCTATCTGCCGGTCGAGGAGTTCCGCTACCA
GCTGGAGGTCAACCTGACCGGGGTGCTGAACGCCACCCAGGCCTTCGCGCCGCTGCTGGGCGCCGGCGGCGAGCGGGTCG
CTCAGCCGGGCCGGATCGTCAACATCTCGTCGGTCGGCGGCCGCAACGCCAATCCGTTCATGGGCCCCTACTGCACGACC
AAGTTCGGCCTGGAGGGCTTTTCGGAGTCGCTGCGCCGCGAGCTTTTGCCCTTCGGCGTGGATGTGGTGGTCGTGGCCCC
CGGCGCGGTGGCGACGCCGATCTGGGACAAGGCCGACCAGGTGGACGTGACCCGCTACGCCAACACCCCCTACGCCAAGG
CGCTGGAGCGGATGCGCGGCTTCATGCTGAGCCTTGGCAAATCAGGCCTGCCGCCCGAGCGGATCGGCGAGACCATCGCC
ACCGCCCTGACCGCGCCGGCGCCCAAGGTCCGCTATGTGGTCTCGCCCTCGCCGATGCAGGTGCTGATGACCGAGATCCT
GCCCAAGCGGACGATCGACAAGGCCACGGGCAAGCGGCTGGGCTTGATCTAG

Upstream 100 bases:

>100_bases
CTCACCCCAACCCTCTCCCCATGGGAGAGGGCGCGCTGTTCCCCCTAGCGAACACTGTTCAGATCGCCCATCTTCCCCGC
AACAGGGGAGGAAACCGTCT

Downstream 100 bases:

>100_bases
CTCAGGCTCCTCCCAGCGCGCGCCAGGCGACATAGCCCGCCGTGGCGACGATCATCACGGCGAACAGGCGCCGCGCCAGC
AGGGCCCGGGCGGCCAGGCG

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MAQTKSVVITGVSTGIGHAATKVLIGKGFHVFGSVRKAADGERLKAEFGDAFTPLVFDVVDEAAVRAGARQVEAALGGAT
LAGLVNNAGIAVAGPLLYLPVEEFRYQLEVNLTGVLNATQAFAPLLGAGGERVAQPGRIVNISSVGGRNANPFMGPYCTT
KFGLEGFSESLRRELLPFGVDVVVVAPGAVATPIWDKADQVDVTRYANTPYAKALERMRGFMLSLGKSGLPPERIGETIA
TALTAPAPKVRYVVSPSPMQVLMTEILPKRTIDKATGKRLGLI

Sequences:

>Translated_283_residues
MAQTKSVVITGVSTGIGHAATKVLIGKGFHVFGSVRKAADGERLKAEFGDAFTPLVFDVVDEAAVRAGARQVEAALGGAT
LAGLVNNAGIAVAGPLLYLPVEEFRYQLEVNLTGVLNATQAFAPLLGAGGERVAQPGRIVNISSVGGRNANPFMGPYCTT
KFGLEGFSESLRRELLPFGVDVVVVAPGAVATPIWDKADQVDVTRYANTPYAKALERMRGFMLSLGKSGLPPERIGETIA
TALTAPAPKVRYVVSPSPMQVLMTEILPKRTIDKATGKRLGLI
>Mature_282_residues
AQTKSVVITGVSTGIGHAATKVLIGKGFHVFGSVRKAADGERLKAEFGDAFTPLVFDVVDEAAVRAGARQVEAALGGATL
AGLVNNAGIAVAGPLLYLPVEEFRYQLEVNLTGVLNATQAFAPLLGAGGERVAQPGRIVNISSVGGRNANPFMGPYCTTK
FGLEGFSESLRRELLPFGVDVVVVAPGAVATPIWDKADQVDVTRYANTPYAKALERMRGFMLSLGKSGLPPERIGETIAT
ALTAPAPKVRYVVSPSPMQVLMTEILPKRTIDKATGKRLGLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI44680136, Length=270, Percent_Identity=34.0740740740741, Blast_Score=131, Evalue=6e-31,
Organism=Homo sapiens, GI44680133, Length=270, Percent_Identity=34.0740740740741, Blast_Score=131, Evalue=6e-31,
Organism=Homo sapiens, GI17738292, Length=270, Percent_Identity=34.0740740740741, Blast_Score=131, Evalue=6e-31,
Organism=Homo sapiens, GI40548397, Length=262, Percent_Identity=33.587786259542, Blast_Score=128, Evalue=5e-30,
Organism=Homo sapiens, GI214010158, Length=262, Percent_Identity=33.587786259542, Blast_Score=128, Evalue=5e-30,
Organism=Homo sapiens, GI214010156, Length=262, Percent_Identity=33.587786259542, Blast_Score=128, Evalue=5e-30,
Organism=Homo sapiens, GI22758144, Length=262, Percent_Identity=33.587786259542, Blast_Score=128, Evalue=5e-30,
Organism=Homo sapiens, GI150247226, Length=267, Percent_Identity=32.9588014981273, Blast_Score=120, Evalue=9e-28,
Organism=Homo sapiens, GI19743808, Length=261, Percent_Identity=31.8007662835249, Blast_Score=118, Evalue=5e-27,
Organism=Homo sapiens, GI22507405, Length=263, Percent_Identity=29.277566539924, Blast_Score=118, Evalue=8e-27,
Organism=Homo sapiens, GI50726952, Length=265, Percent_Identity=31.6981132075472, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI223718074, Length=272, Percent_Identity=32.3529411764706, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI119392083, Length=268, Percent_Identity=30.9701492537313, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI20149619, Length=209, Percent_Identity=29.1866028708134, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI4504503, Length=207, Percent_Identity=29.4685990338164, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI7657478, Length=275, Percent_Identity=29.0909090909091, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI7705925, Length=191, Percent_Identity=32.9842931937173, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=26.4, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=28.8702928870293, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI210032110, Length=180, Percent_Identity=31.1111111111111, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI4758504, Length=199, Percent_Identity=30.1507537688442, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=29.0816326530612, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1786701, Length=271, Percent_Identity=32.1033210332103, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1787335, Length=192, Percent_Identity=31.7708333333333, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87082100, Length=194, Percent_Identity=31.4432989690722, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787820, Length=187, Percent_Identity=30.4812834224599, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789378, Length=199, Percent_Identity=29.1457286432161, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788459, Length=216, Percent_Identity=30.0925925925926, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=266, Percent_Identity=31.9548872180451, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI193210355, Length=264, Percent_Identity=29.5454545454545, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17557780, Length=200, Percent_Identity=33.5, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17507613, Length=275, Percent_Identity=26.9090909090909, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32563809, Length=275, Percent_Identity=26.9090909090909, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=216, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=191, Percent_Identity=30.3664921465969, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=234, Percent_Identity=28.6324786324786, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17555706, Length=264, Percent_Identity=28.4090909090909, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=203, Percent_Identity=30.0492610837438, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=199, Percent_Identity=29.6482412060301, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=30.9644670050761, Blast_Score=80, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6322067, Length=194, Percent_Identity=29.3814432989691, Blast_Score=73, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24651139, Length=276, Percent_Identity=27.8985507246377, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI28571387, Length=205, Percent_Identity=31.219512195122, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24643142, Length=190, Percent_Identity=33.1578947368421, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI281364494, Length=271, Percent_Identity=28.0442804428044, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19922066, Length=297, Percent_Identity=27.6094276094276, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI23397609, Length=203, Percent_Identity=35.9605911330049, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24641388, Length=203, Percent_Identity=33.9901477832512, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007236, Length=201, Percent_Identity=31.3432835820896, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21358495, Length=253, Percent_Identity=25.296442687747, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639444, Length=241, Percent_Identity=29.045643153527, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571526, Length=243, Percent_Identity=31.2757201646091, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007238, Length=199, Percent_Identity=29.1457286432161, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007234, Length=238, Percent_Identity=31.9327731092437, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29716; Mature: 29585

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTKSVVITGVSTGIGHAATKVLIGKGFHVFGSVRKAADGERLKAEFGDAFTPLVFDVV
CCCCCEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
DEAAVRAGARQVEAALGGATLAGLVNNAGIAVAGPLLYLPVEEFRYQLEVNLTGVLNATQ
HHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCEEEEEHHHCEEEEEEEEEEHHHHHH
AFAPLLGAGGERVAQPGRIVNISSVGGRNANPFMGPYCTTKFGLEGFSESLRRELLPFGV
HHHHHHCCCCHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHCCCCC
DVVVVAPGAVATPIWDKADQVDVTRYANTPYAKALERMRGFMLSLGKSGLPPERIGETIA
EEEEECCCCEECCCCCCCCCEEHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
TALTAPAPKVRYVVSPSPMQVLMTEILPKRTIDKATGKRLGLI
HHHCCCCCCEEEEECCCHHHHHHHHHHCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AQTKSVVITGVSTGIGHAATKVLIGKGFHVFGSVRKAADGERLKAEFGDAFTPLVFDVV
CCCCEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
DEAAVRAGARQVEAALGGATLAGLVNNAGIAVAGPLLYLPVEEFRYQLEVNLTGVLNATQ
HHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCEEEEEHHHCEEEEEEEEEEHHHHHH
AFAPLLGAGGERVAQPGRIVNISSVGGRNANPFMGPYCTTKFGLEGFSESLRRELLPFGV
HHHHHHCCCCHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHCCCCC
DVVVVAPGAVATPIWDKADQVDVTRYANTPYAKALERMRGFMLSLGKSGLPPERIGETIA
EEEEECCCCEECCCCCCCCCEEHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
TALTAPAPKVRYVVSPSPMQVLMTEILPKRTIDKATGKRLGLI
HHHCCCCCCEEEEECCCHHHHHHHHHHCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]