Click here to switch to the map view.

The map label for this gene is smf [H]

Identifier: 16126686

GI number: 16126686

Start: 2651244

End: 2652341

Strand: Direct

Name: smf [H]

Synonym: CC_2447

Alternate gene names: 16126686

Gene position: 2651244-2652341 (Clockwise)

Preceding gene: 16126685

Following gene: 16126687

Centisome position: 66.0

GC content: 73.95

Gene sequence:

>1098_bases
GTGACGCCCGGCCGGCTCTCGGACATCCAGCGCTTCGCCTGGCTGCGCCTGGCGCGTACCGAGACCGTCGGCCCCGTCGC
CTTCGACCATCTGCTGACCCGCTACGGCACGCCCGAGCGGGCTCTGTCGGCCCTGCCCGACCTGTCGCGCAAGGGCGGCC
GCGCCGTACCGCTGTCCCTGCCGCCGCGCGAGGCGATCGAGCAGGAGCTTGAGGCCGGCGAGAAACTGGGCGCGCGCCTG
ATCTGCGGCGGCGAGCCCGACTTTCCGCCAAGGCTGGCCGCACTTGATCCGCCGCCGCCGGTGCTGTGGGCGCTGGGGCG
GGCCGAACTCCTCTCCCAGCCCAGTCTCGCCATCGTCGGGGCCCGCATAGCCTCGGCCGCCGGCCAGCGCTTTGCGCGCC
AGCTTGCCACCGATCTCGGGACCGCCGGCCATGTCATCGTCTCGGGCATGGCGCGCGGCATCGACGGCGCCGCGCATGAG
GGCTCGCTGGCGACCGGCGCGGTAGCGGTGCTGGGCGGCGGGGTCGGCGACATCTATCCGCCCGAACACGACAAGCTGCA
CGCCCGCCTGGCCGCCGAGGGCTGCGTCGTCTCGGAAAGCGCGCCCGACCGCCGCGCCCAGGCCAAGGACTTTCCGCGCC
GCAACCGGATCATTTCGGGCCTGTCGCTGGGCGTGATCGTGGTCGAGGCCGAGCTGAAGTCGGGCTCGCTGATCACCGCG
CGCCTGGCCGCCGAGCAGGGCCGCGACGTCTTCGCCGTGCCGGGCTCGCCGCTGGATCCGCGCTCCAAGGGCACGAACGA
CCTGATCCGCCAGGGCGCGATCCTGTGCGAAGGCGCGGAGGACGTGCTGCGGTCGCTGTCGGGCCAGACCCACCTGCGCG
AACAGGACCGCGCCTACGAGGCCCTGCCCGACATGGATATCGACCACGACGCCCTGCGCGAGCGCGTCGCCGCCCTGCTC
TCGCCCACGCCGGTGTCGCGCAACGATCTGGTTCGTGCGGCCGCCGCCCCCGCCTCGGCGGTGATGGCCGCGCTGGTGGA
GCTGAGCCTGGCCCGCCGCGCCGAGCTTCTGGACGGCGGGATGGTCGCAGGGGTGTAG

Upstream 100 bases:

>100_bases
TCCGTCACCGCGAGAACATCGCGCGCCTGCTCAAGGGTGAAGAGCCCAAGATCGGCAAGAAGAAGCCGGCGGAGGAAGCT
CCGCCCGCACCCGACGCGCC

Downstream 100 bases:

>100_bases
CCTTCCCGTCGGCGATCCGAACGGCGCCTGATAAGCTCCGCGAAGAAAGAGCGGGAGCGATTCGTGGACGCCGACCACCT
GCAGCGGATCTTCGACGAAG

Product: dprA protein

Products: NA

Alternate protein names: DNA-processing chain A [H]

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MTPGRLSDIQRFAWLRLARTETVGPVAFDHLLTRYGTPERALSALPDLSRKGGRAVPLSLPPREAIEQELEAGEKLGARL
ICGGEPDFPPRLAALDPPPPVLWALGRAELLSQPSLAIVGARIASAAGQRFARQLATDLGTAGHVIVSGMARGIDGAAHE
GSLATGAVAVLGGGVGDIYPPEHDKLHARLAAEGCVVSESAPDRRAQAKDFPRRNRIISGLSLGVIVVEAELKSGSLITA
RLAAEQGRDVFAVPGSPLDPRSKGTNDLIRQGAILCEGAEDVLRSLSGQTHLREQDRAYEALPDMDIDHDALRERVAALL
SPTPVSRNDLVRAAAAPASAVMAALVELSLARRAELLDGGMVAGV

Sequences:

>Translated_365_residues
MTPGRLSDIQRFAWLRLARTETVGPVAFDHLLTRYGTPERALSALPDLSRKGGRAVPLSLPPREAIEQELEAGEKLGARL
ICGGEPDFPPRLAALDPPPPVLWALGRAELLSQPSLAIVGARIASAAGQRFARQLATDLGTAGHVIVSGMARGIDGAAHE
GSLATGAVAVLGGGVGDIYPPEHDKLHARLAAEGCVVSESAPDRRAQAKDFPRRNRIISGLSLGVIVVEAELKSGSLITA
RLAAEQGRDVFAVPGSPLDPRSKGTNDLIRQGAILCEGAEDVLRSLSGQTHLREQDRAYEALPDMDIDHDALRERVAALL
SPTPVSRNDLVRAAAAPASAVMAALVELSLARRAELLDGGMVAGV
>Mature_364_residues
TPGRLSDIQRFAWLRLARTETVGPVAFDHLLTRYGTPERALSALPDLSRKGGRAVPLSLPPREAIEQELEAGEKLGARLI
CGGEPDFPPRLAALDPPPPVLWALGRAELLSQPSLAIVGARIASAAGQRFARQLATDLGTAGHVIVSGMARGIDGAAHEG
SLATGAVAVLGGGVGDIYPPEHDKLHARLAAEGCVVSESAPDRRAQAKDFPRRNRIISGLSLGVIVVEAELKSGSLITAR
LAAEQGRDVFAVPGSPLDPRSKGTNDLIRQGAILCEGAEDVLRSLSGQTHLREQDRAYEALPDMDIDHDALRERVAALLS
PTPVSRNDLVRAAAAPASAVMAALVELSLARRAELLDGGMVAGV

Specific function: Essential for efficient chromosomal DNA transformation but not required for plasmid transformation [H]

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=308, Percent_Identity=40.2597402597403, Blast_Score=178, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 38319; Mature: 38188

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPGRLSDIQRFAWLRLARTETVGPVAFDHLLTRYGTPERALSALPDLSRKGGRAVPLSL
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCEECCCC
PPREAIEQELEAGEKLGARLICGGEPDFPPRLAALDPPPPVLWALGRAELLSQPSLAIVG
CCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCHHHHH
ARIASAAGQRFARQLATDLGTAGHVIVSGMARGIDGAAHEGSLATGAVAVLGGGVGDIYP
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCC
PEHDKLHARLAAEGCVVSESAPDRRAQAKDFPRRNRIISGLSLGVIVVEAELKSGSLITA
CCCHHHHHHHHHCCCEECCCCCCHHHHHHCCCHHHHHHHCCEEEEEEEEEECCCCCEEEE
RLAAEQGRDVFAVPGSPLDPRSKGTNDLIRQGAILCEGAEDVLRSLSGQTHLREQDRAYE
EHHHHCCCEEEECCCCCCCCCCCCHHHHHHCCCEEECCHHHHHHHHCCCHHHHHHHHHHH
ALPDMDIDHDALRERVAALLSPTPVSRNDLVRAAAAPASAVMAALVELSLARRAELLDGG
HCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
MVAGV
CCCCC
>Mature Secondary Structure 
TPGRLSDIQRFAWLRLARTETVGPVAFDHLLTRYGTPERALSALPDLSRKGGRAVPLSL
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCEECCCC
PPREAIEQELEAGEKLGARLICGGEPDFPPRLAALDPPPPVLWALGRAELLSQPSLAIVG
CCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCHHHHH
ARIASAAGQRFARQLATDLGTAGHVIVSGMARGIDGAAHEGSLATGAVAVLGGGVGDIYP
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCC
PEHDKLHARLAAEGCVVSESAPDRRAQAKDFPRRNRIISGLSLGVIVVEAELKSGSLITA
CCCHHHHHHHHHCCCEECCCCCCHHHHHHCCCHHHHHHHCCEEEEEEEEEECCCCCEEEE
RLAAEQGRDVFAVPGSPLDPRSKGTNDLIRQGAILCEGAEDVLRSLSGQTHLREQDRAYE
EHHHHCCCEEEECCCCCCCCCCCCHHHHHHCCCEEECCHHHHHHHHCCCHHHHHHHHHHH
ALPDMDIDHDALRERVAALLSPTPVSRNDLVRAAAAPASAVMAALVELSLARRAELLDGG
HCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
MVAGV
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7768823; 7542800 [H]