Click here to switch to the map view.

The map label for this gene is hfsH

Identifier: 16126667

GI number: 16126667

Start: 2634549

End: 2635322

Strand: Direct

Name: hfsH

Synonym: CC_2428

Alternate gene names: NA

Gene position: 2634549-2635322 (Clockwise)

Preceding gene: 16126666

Following gene: 16126671

Centisome position: 65.59

GC content: 71.06

Gene sequence:

>774_bases
ATGCCGATGGAATTCGAGAAGGTCGACGCCTACGAGCCCGACCGCAGCCTGAAGGGCAAGCTACGCCGCCGGCTGATCCG
GCTGGCCCACCGCCGGCCGGCCAAGGTGGCGCTGGAGCGTCCGATGGTGTCGTTCAGCTTCGACGACGCCCCCGCCACCG
CCTGCGAGGCCGGCGCCAGGGCTCTGGAGGCGCGGGGCCTGCGCGGCACCTATTACTTCGCGGCGGGTCTGACGGGCCGC
GACGGTCCGATGGGCCGCTACGCCACGGGCGAGGACGCGCGCCGCCTGCATGAGGCCGGCCACGAAATCGCCTGCCACAC
CTACTCCCACCTCGATTGTGGCCAGTCGAGCCAGACCGAGACGCTGGCGGATGTGGACCGCAACGCCGAGAGCCTCGCGG
CCTGGGGCGCGGGAGACCCGGTCAGCTTCGCCTATCCCTACGGGGATGTGGCCGCGCCGGCCAAGACCGCGCTGAGCGGC
CGGTTCAAGACGCTGCGCGCGCTGCACCACGGGCTGATCACCGACGGCGCGGATCTCAACCAGACGCCCGCCGTCGGCAT
CGAGGGCGAGGATGGCGAGACAGTCGCCAAGGCTTGGCTCGACAAGGCCAAGGCGCGCAAGGCCTGGCTGATCCTCTACA
CCCACGATGTGGCTGGGCAGCCGTCCCAATGGGGCTGCACCACGGAGGCGCTGGAGCGCCTGATCGATCGCGCCCTCGCC
GACGGGTTCGATGTGGTGACCGTGGCCGAGGGCTCGCGGCGGATCGGGCTCTAA

Upstream 100 bases:

>100_bases
CGCTTCTGAAACAGGTGGCGCTGGCCGAGGCCGCGCCCGTCTCCCTCCGCGCCTTCGCCATGCGGCTCTATCGCGCGGCG
CTCTACAGCGAGGCCGTCTG

Downstream 100 bases:

>100_bases
GCCTCGTCCTGAGCCCGGTCGGAGAAGGCCAACTTGGCGGCCAGCGAGACGAACAGCACCCAGCGGAAGTCGTTATAGAC
CACCGCGATGCTCTCGGTCA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Polysaccharide Deacetylase Domain Protein; Oligosaccharide Deacetylase HfsH

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MPMEFEKVDAYEPDRSLKGKLRRRLIRLAHRRPAKVALERPMVSFSFDDAPATACEAGARALEARGLRGTYYFAAGLTGR
DGPMGRYATGEDARRLHEAGHEIACHTYSHLDCGQSSQTETLADVDRNAESLAAWGAGDPVSFAYPYGDVAAPAKTALSG
RFKTLRALHHGLITDGADLNQTPAVGIEGEDGETVAKAWLDKAKARKAWLILYTHDVAGQPSQWGCTTEALERLIDRALA
DGFDVVTVAEGSRRIGL

Sequences:

>Translated_257_residues
MPMEFEKVDAYEPDRSLKGKLRRRLIRLAHRRPAKVALERPMVSFSFDDAPATACEAGARALEARGLRGTYYFAAGLTGR
DGPMGRYATGEDARRLHEAGHEIACHTYSHLDCGQSSQTETLADVDRNAESLAAWGAGDPVSFAYPYGDVAAPAKTALSG
RFKTLRALHHGLITDGADLNQTPAVGIEGEDGETVAKAWLDKAKARKAWLILYTHDVAGQPSQWGCTTEALERLIDRALA
DGFDVVTVAEGSRRIGL
>Mature_256_residues
PMEFEKVDAYEPDRSLKGKLRRRLIRLAHRRPAKVALERPMVSFSFDDAPATACEAGARALEARGLRGTYYFAAGLTGRD
GPMGRYATGEDARRLHEAGHEIACHTYSHLDCGQSSQTETLADVDRNAESLAAWGAGDPVSFAYPYGDVAAPAKTALSGR
FKTLRALHHGLITDGADLNQTPAVGIEGEDGETVAKAWLDKAKARKAWLILYTHDVAGQPSQWGCTTEALERLIDRALAD
GFDVVTVAEGSRRIGL

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27869; Mature: 27737

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMEFEKVDAYEPDRSLKGKLRRRLIRLAHRRPAKVALERPMVSFSFDDAPATACEAGAR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCHHHHHHHHH
ALEARGLRGTYYFAAGLTGRDGPMGRYATGEDARRLHEAGHEIACHTYSHLDCGQSSQTE
HHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHH
TLADVDRNAESLAAWGAGDPVSFAYPYGDVAAPAKTALSGRFKTLRALHHGLITDGADLN
HHHHHHCCHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
QTPAVGIEGEDGETVAKAWLDKAKARKAWLILYTHDVAGQPSQWGCTTEALERLIDRALA
CCCCCEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
DGFDVVTVAEGSRRIGL
CCCCEEEECCCCCCCCC
>Mature Secondary Structure 
PMEFEKVDAYEPDRSLKGKLRRRLIRLAHRRPAKVALERPMVSFSFDDAPATACEAGAR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCHHHHHHHHH
ALEARGLRGTYYFAAGLTGRDGPMGRYATGEDARRLHEAGHEIACHTYSHLDCGQSSQTE
HHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHH
TLADVDRNAESLAAWGAGDPVSFAYPYGDVAAPAKTALSGRFKTLRALHHGLITDGADLN
HHHHHHCCHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
QTPAVGIEGEDGETVAKAWLDKAKARKAWLILYTHDVAGQPSQWGCTTEALERLIDRALA
CCCCCEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
DGFDVVTVAEGSRRIGL
CCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA