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The map label for this gene is ptlF [H]

Identifier: 16126660

GI number: 16126660

Start: 2626844

End: 2627602

Strand: Direct

Name: ptlF [H]

Synonym: CC_2421

Alternate gene names: 16126660

Gene position: 2626844-2627602 (Clockwise)

Preceding gene: 16126659

Following gene: 16126661

Centisome position: 65.39

GC content: 64.69

Gene sequence:

>759_bases
ATGACCTGGACGCGCGCCTTGCTCGGCGCTTTGGCGGCGTTGCTCCTGACCAACCCCGTCGCTTCCGCGAACGCCGCGCC
TGACCAGCGTGTCCGGATCGTACGTTATGTACCCGACCAGGTCGTCCGGCTGGACGCCACGCTCGGCTTTGTCGTCACGC
TGTTTTTCGGCGAGGACGAGCGGATCGAGAACGTCGCCGTCGGCGACAGCCTAGGCTGGCAGATCACGCCAAACCGCCGC
GCGCGCGTTCTATTTGTCAAACCCAATGAGCGGGCCACTGCGACCAACATGACCGTGGTCACCACGCTGCGCAGCTATAA
CTTCGACCTGCGCGCCGTGGCGAGTTCGCGCGCCCGTCAGCCGCTGTTCTCCCTGCGCTTCGACTACCCAGCGCCCGCAA
AGGCCGTTCTCGCAACACCGGCGATCACCCCTCCATCGCCGCCCGAACCACCCCAAGAGGTCAACAAGGCCTACAGCTTC
AGCGGCTCGTCTCAAGGACTGCCCGAGCGGGTGTTCGACGATGGCGTATCGACCTTTTTCGTCTTCCCGGCGGGCGTCGA
CTATCCGGCGATCTTCGCGGTCGATCCCGACAACAAGGAGGCGGTCGTTAACATCGCCCAGCGAGATGGCTTTGTCATCG
TCGACCGCCTGGCCAGCGCCTTCGTCCTGCGGCGGGGCCAACAGGTGACCCGCATCATCAATGACGGATATCGCGAGGCG
ACGACGGCCACCAGCCTCTCGGCTCGAAAGTCGCGTTGA

Upstream 100 bases:

>100_bases
CTCGAGCGACCTTGGCCTCTCCTCGCGCGCAAGCGCGCGAGGAGCCTCATCGCCGTAGCGCCTTCATGGATCACTATCGC
AACCTGACCGGAGGGTCCCG

Downstream 100 bases:

>100_bases
GGACTCCCAGACCATGACCGCGCCTTCGCCTCCCTCAGACCCCCAACTCGACAGCCCCGTGCTGCGTCCACTGGGCTACG
GGCCCACCGCCGTCAGCCGC

Product: type IV secretion system protein B9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MTWTRALLGALAALLLTNPVASANAAPDQRVRIVRYVPDQVVRLDATLGFVVTLFFGEDERIENVAVGDSLGWQITPNRR
ARVLFVKPNERATATNMTVVTTLRSYNFDLRAVASSRARQPLFSLRFDYPAPAKAVLATPAITPPSPPEPPQEVNKAYSF
SGSSQGLPERVFDDGVSTFFVFPAGVDYPAIFAVDPDNKEAVVNIAQRDGFVIVDRLASAFVLRRGQQVTRIINDGYREA
TTATSLSARKSR

Sequences:

>Translated_252_residues
MTWTRALLGALAALLLTNPVASANAAPDQRVRIVRYVPDQVVRLDATLGFVVTLFFGEDERIENVAVGDSLGWQITPNRR
ARVLFVKPNERATATNMTVVTTLRSYNFDLRAVASSRARQPLFSLRFDYPAPAKAVLATPAITPPSPPEPPQEVNKAYSF
SGSSQGLPERVFDDGVSTFFVFPAGVDYPAIFAVDPDNKEAVVNIAQRDGFVIVDRLASAFVLRRGQQVTRIINDGYREA
TTATSLSARKSR
>Mature_251_residues
TWTRALLGALAALLLTNPVASANAAPDQRVRIVRYVPDQVVRLDATLGFVVTLFFGEDERIENVAVGDSLGWQITPNRRA
RVLFVKPNERATATNMTVVTTLRSYNFDLRAVASSRARQPLFSLRFDYPAPAKAVLATPAITPPSPPEPPQEVNKAYSFS
GSSQGLPERVFDDGVSTFFVFPAGVDYPAIFAVDPDNKEAVVNIAQRDGFVIVDRLASAFVLRRGQQVTRIINDGYREAT
TATSLSARKSR

Specific function: Unknown

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 27601; Mature: 27469

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWTRALLGALAALLLTNPVASANAAPDQRVRIVRYVPDQVVRLDATLGFVVTLFFGEDE
CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEEECCCHHEEEHHHHEEEEEEEECCCC
RIENVAVGDSLGWQITPNRRARVLFVKPNERATATNMTVVTTLRSYNFDLRAVASSRARQ
CCCEEEECCCCCEEECCCCCEEEEEECCCCCCCCCCEEEEEEEHHCCCCHHHHHHHHHCC
PLFSLRFDYPAPAKAVLATPAITPPSPPEPPQEVNKAYSFSGSSQGLPERVFDDGVSTFF
CCEEEEECCCCCCHHEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCEEE
VFPAGVDYPAIFAVDPDNKEAVVNIAQRDGFVIVDRLASAFVLRRGQQVTRIINDGYREA
EEECCCCCCEEEEECCCCCCEEEEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHCCCHHH
TTATSLSARKSR
HHHHHCHHCCCC
>Mature Secondary Structure 
TWTRALLGALAALLLTNPVASANAAPDQRVRIVRYVPDQVVRLDATLGFVVTLFFGEDE
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEEECCCHHEEEHHHHEEEEEEEECCCC
RIENVAVGDSLGWQITPNRRARVLFVKPNERATATNMTVVTTLRSYNFDLRAVASSRARQ
CCCEEEECCCCCEEECCCCCEEEEEECCCCCCCCCCEEEEEEEHHCCCCHHHHHHHHHCC
PLFSLRFDYPAPAKAVLATPAITPPSPPEPPQEVNKAYSFSGSSQGLPERVFDDGVSTFF
CCEEEEECCCCCCHHEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCEEE
VFPAGVDYPAIFAVDPDNKEAVVNIAQRDGFVIVDRLASAFVLRRGQQVTRIINDGYREA
EEECCCCCCEEEEECCCCCCEEEEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHCCCHHH
TTATSLSARKSR
HHHHHCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12910271; 3584073 [H]