Click here to switch to the map view.

The map label for this gene is flgH

Identifier: 16126305

GI number: 16126305

Start: 2277156

End: 2277890

Strand: Direct

Name: flgH

Synonym: CC_2066

Alternate gene names: 16126305

Gene position: 2277156-2277890 (Clockwise)

Preceding gene: 16126304

Following gene: 16126306

Centisome position: 56.69

GC content: 68.98

Gene sequence:

>735_bases
ATGCGTCGTCCTGCTATCCTCGCCGCCGCCGTCCTCCTGGCCCCGCTGGCCGCCTGCTCGACCGTCAAGGAGGCCGTCAA
GGGTCCGGATCTCGCGCCCGTCGGCTACCCGGCCCCTCTGGCCCCCATGCAACAGCAGTACGTGTCGGCCCGCGAGCCCG
CCCCGCAGGCGGCTTCGGCCAACTCGCTGTGGCGGGTCGGGGCCCGCGCCTTCTTCAACGACCAGCGCGCCAGCCGCGTC
GGCGACATCGTCACCGTGATGATCGACATCGACGACAGCGCCAGCACCAAGAACGCGACCAACAGCTCGCGCACCGCCAA
TATGAAGGCCGGCGTGCCGCATCTGCTGGGCATGGAATCGAGCCTGGGCAAGTTCCTGCCGGGCGGCTTCGATCCGGCCT
CGGCGCTGGAGACCAACTCGACCACCACCAACGCCGGCTCGGGCGGCGTCAGCCGGTCGGAAAAGATCAGCCTGACGATC
GCCGCTGTGGTCAGCCAGGTTCTGCCGAACGGCAACATGGTCATCCAGGGCACCCAGGAAGTGCGCACCAACGCCGAGCT
GCGCCAGCTGACCGTGGCCGGTATCGTCCGCCCCGAGGACATCTCCTCGGCCAACACCATCCGCCACACTCAGATCGCCG
AAGCCCGCATCAGCTACGGCGGCCGCGGCGACATCAGCCGCGTGCAGAAGACCCCGGCCGGCCAGTCGCTGGTCGAGAAG
TTCTCGCCCTTCTAG

Upstream 100 bases:

>100_bases
GGCCGTCGGCCCCGGCGCCGCCGCTGTCGGCCCGCAGGCCCAGAGCTTGCAAGCCCGCTCGCAACCCCTCCGTTTCGCCG
CTCGCTAAGAGGTCCAGATC

Downstream 100 bases:

>100_bases
GCGCGGCTTTTGCGACACAGACGTCGGGCGCGGCGGCCGAGAGGCTTCCGCGCCCGATGCGTTTCAGGAGCCGTTCAGGT
GCGCTCAGCGTTGATCCGAT

Product: flagellar basal body L-ring protein

Products: NA

Alternate protein names: Basal body L-ring protein

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MRRPAILAAAVLLAPLAACSTVKEAVKGPDLAPVGYPAPLAPMQQQYVSAREPAPQAASANSLWRVGARAFFNDQRASRV
GDIVTVMIDIDDSASTKNATNSSRTANMKAGVPHLLGMESSLGKFLPGGFDPASALETNSTTTNAGSGGVSRSEKISLTI
AAVVSQVLPNGNMVIQGTQEVRTNAELRQLTVAGIVRPEDISSANTIRHTQIAEARISYGGRGDISRVQKTPAGQSLVEK
FSPF

Sequences:

>Translated_244_residues
MRRPAILAAAVLLAPLAACSTVKEAVKGPDLAPVGYPAPLAPMQQQYVSAREPAPQAASANSLWRVGARAFFNDQRASRV
GDIVTVMIDIDDSASTKNATNSSRTANMKAGVPHLLGMESSLGKFLPGGFDPASALETNSTTTNAGSGGVSRSEKISLTI
AAVVSQVLPNGNMVIQGTQEVRTNAELRQLTVAGIVRPEDISSANTIRHTQIAEARISYGGRGDISRVQKTPAGQSLVEK
FSPF
>Mature_244_residues
MRRPAILAAAVLLAPLAACSTVKEAVKGPDLAPVGYPAPLAPMQQQYVSAREPAPQAASANSLWRVGARAFFNDQRASRV
GDIVTVMIDIDDSASTKNATNSSRTANMKAGVPHLLGMESSLGKFLPGGFDPASALETNSTTTNAGSGGVSRSEKISLTI
AAVVSQVLPNGNMVIQGTQEVRTNAELRQLTVAGIVRPEDISSANTIRHTQIAEARISYGGRGDISRVQKTPAGQSLVEK
FSPF

Specific function: Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation

COG id: COG2063

COG function: function code N; Flagellar basal body L-ring protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable). Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgH family

Homologues:

Organism=Escherichia coli, GI1787319, Length=213, Percent_Identity=30.5164319248826, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGH_CAUCR (P22606)

Other databases:

- EMBL:   M37270
- EMBL:   AE005673
- PIR:   A36148
- PIR:   A87505
- RefSeq:   NP_420869.1
- GeneID:   942988
- GenomeReviews:   AE005673_GR
- KEGG:   ccr:CC_2066
- NMPDR:   fig|190650.1.peg.2049
- TIGR:   CC_2066
- HOGENOM:   HBG507455
- OMA:   SMASANE
- ProtClustDB:   PRK00249
- HAMAP:   MF_00415
- InterPro:   IPR000527
- PRINTS:   PR01008

Pfam domain/function: PF02107 FlgH

EC number: NA

Molecular weight: Translated: 25525; Mature: 25525

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS51257 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPAILAAAVLLAPLAACSTVKEAVKGPDLAPVGYPAPLAPMQQQYVSAREPAPQAASA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
NSLWRVGARAFFNDQRASRVGDIVTVMIDIDDSASTKNATNSSRTANMKAGVPHLLGMES
HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCHH
SLGKFLPGGFDPASALETNSTTTNAGSGGVSRSEKISLTIAAVVSQVLPNGNMVIQGTQE
HHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECHHH
VRTNAELRQLTVAGIVRPEDISSANTIRHTQIAEARISYGGRGDISRVQKTPAGQSLVEK
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHH
FSPF
HCCC
>Mature Secondary Structure
MRRPAILAAAVLLAPLAACSTVKEAVKGPDLAPVGYPAPLAPMQQQYVSAREPAPQAASA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
NSLWRVGARAFFNDQRASRVGDIVTVMIDIDDSASTKNATNSSRTANMKAGVPHLLGMES
HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCHH
SLGKFLPGGFDPASALETNSTTTNAGSGGVSRSEKISLTIAAVVSQVLPNGNMVIQGTQE
HHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECHHH
VRTNAELRQLTVAGIVRPEDISSANTIRHTQIAEARISYGGRGDISRVQKTPAGQSLVEK
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHH
FSPF
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2211524; 11259647