| Definition | Caulobacter crescentus CB15 chromosome, complete genome. |
|---|---|
| Accession | NC_002696 |
| Length | 4,016,947 |
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The map label for this gene is nrdJ [H]
Identifier: 16126132
GI number: 16126132
Start: 2082156
End: 2084969
Strand: Direct
Name: nrdJ [H]
Synonym: CC_1889
Alternate gene names: 16126132
Gene position: 2082156-2084969 (Clockwise)
Preceding gene: 16126128
Following gene: 16126133
Centisome position: 51.83
GC content: 70.54
Gene sequence:
>2814_bases GTGCGACCTTACGCCCATCCCGGCCGCGTGGAATCACACGTTAGGGATTTGGTAAGCACTCACGCTGGCATCTCGGACCT GGAAACGCCCATGCGCCCCTCCGCCAAAGCCGCAGGCCTCGTCCCCGCGATGGAATGGCGCGACCTGGAACGGGCCGACA GCGTTCAGGTCGTTTCGGCGCCGTCGTCATGGTCGGACGCCCGTGTCGAAGCCTGGCTCGACTGGGGCGGCGAGATCGAA CCGAAGGCTCCGCTTGGCGGCGGTCCGGCGCGTTACGCTGCGCGCGTGGCGCAACTGGGCCTCTCGCGCGGCCTGTTCGG CGACAAGGCCGACGCCGATGCCTTCCGCGAGGCGTTGTTGACCACGATGCTCACCGGGATAGCGACCCCGACCTCGGGCC AGACGGGTCTGCGGCTGCTGCCCGACATCACCGAGTTCGAATTCCAGAGCCAGGCGCGGGACATCCTGGGGCAGCGCCGG GCGCGCCTCCTGGCGGCTCAAGCCGCTGCGCGTTTGAACACCGCGCTCGACCAGGTCGCAGACGCGGTGCGTCGCTGCTC GGGCGATAGCCGCGCCTGCAGCGATGTTCGCAAGAACCCGGCCCTGGCCCGGGCCGCGCGCAAGGCGCGTGAACTGGGCG CGGACGACCAGACCATCCTGGACGCCATCGCCTTGGCCGACCAGCCCCGTGCGCCGCTGACCGCGCTCGCCGTCGATGAT GAGCTGCCCCTTGTCGCCGCCGCAACCCGTCAAGCGGTCGCCGCCGGCGACGAGGCCGCGACTCTGGCCGCTCAGGTCGG TTGGGAGACCAGCGCCCTGACCCTGGCCCTGTCGCCGACCGACGCCGAAGCCCTGTCGCGCGGCGCGGCGATCGGCGCGG CGATCGACGCCAGCACCTTCCTGGACGCCGAAGGGTTCGACATCGAGCGCTTCACCTTCGTCTGCCACCTGTGGGCCACG GCCCTGGAACTGGACCGGGGCGAGCGCCCCGCGCGCCTTTCGCTCGCGGGCGTGGGCGATTGCCTGCTCAGCCAAGGCTA CGCCCAGACCAGTATCGAAGGTCGCGACGGCGCGGCCGCCTTGTGGGCCCTGGCCGTCGGCGCGGCGCTGTCCGCCAGCG CCGAGGCCGCAGCCACACTGGGCCAAGACCCCGCCTTTGATCAGGATCGCCAAGGCGTACTGAAGACCCTGGCCGAACGC CGGGTCCGCGCCGCCGCTCTGCGCTCGGCGCTCGCCACCGAAGCCGCTGCGGCGCTGGCGACGGCCCACGCGCTGGCCCG CAAGCACGGCCTGCGTTCGGCCGGCTTGGTGGGACCGTTCGCGGACCTCGAGGCGACCTTGCGCCTGGGCGGCTCGCCCG TCGGCGCGGCAGGCGCCATGGCGCCGGTGTCTGTGTCACAAACCGCAGACGGCTTCCTGATGCCGAGCTTCAGCGCCGCC GCTTTCGAGGCGCTGTCATCGGAGGGCGTCGATCTCGATGCCGCCCGGCGGCATGCGCTGGGCCACGGATCGCTGGCCGA GAGCCCCGCGATCGATCACGCCATGCTGCAGGCGCGCGGCTTCACCGCTCACGAGATCGAGAAGGCCGAAAACGCCCTGC GCGAGCATCAGGGCGTGCGGGCGGCCTTCGCCCCGGCGATTGTCGGCGCAGGCTTCCTTCGCGACGTCCTGGGCGCGTCC GCCGAAGATGTCGCGCGCCGTGACTTCGACACCCTGGCCTTCGCCGACTTCTCGGCGGCGGAAATCGCGGCCGCCGAGCG CCATGCGCTGGGCGCGGGCACGCTGGGCGATTGCGAAGCCCTGAACCCTGATCTTCGCGAAGCTTTCCGGTCCGTGGAGG CTCCCTCGTTCAATGACCGCCTGGCGATGCTGGCGGCGGTGGAGAGCTTCGCTTGCCTGCCGACGGCCGTAACGGTCTCG ATACCGCATGACGCGCGCCCGGCCGACGCCGTGCGCGCCCAGGCTGCGGCGGCCAGGGCCGGCGTCCGCGCCCTGCGCCT GCAGCGCGCGCCCACGCCGTACGACTTCAAGCTCGATCTGCCCGAGGAGCCGACGGCCGAAGCGCCCCGCCCCGCTCCGG CGCGAGAACCATTGGTGACCGAGCGCGTCGTCGAGCGGATCGTCGAGCGCGACCGCTCGCGCCGTCGCCTCCCCGACCGT CGCAAGGGCTACATCCAGAAAGCGGCCGTGGGCGGGCACAAGGTCTATCTGCATACCGGCGAGTACGAGGACGGCGAACT GGGTGAGCTGTTCATCGATATGCACAAGGAAGGCGCGGCCTTCCGGAGCCTGATGAACAACTTCGCCATCGCCGTCTCGC TGGGCCTGCAGCACGGCGTGCCGCTGGACGAGTTCGTCGACGCCTTCGTCTACACCAAGTTCGAGCCGGCGGGTCCGGTC ACCGGCAATGACTCGATCAAGTCCGCGACCTCCATCCTGGACTACATTTTCCGAGAACTGGGCGTCTCCTACCTCGGCCG TGACGACCTCGCCAACGGTGATCCCGGCCAGTTCAACGCCGATGGGCTCGGCGCGGGCAAGCGCCTTGCCGAAGACGACC TGCTGGACGACGAAGCCGATCCCGTTCCGGCTAGTCGCTTCATTTCCAAGGGCTTTTCACGGGGCGCCACGCCGGACAAT CTGGTGTTCGCCAGCTTCGGCCACCGACGCGTGGAAGGCGCCGATCGTCCCGGCGCGGATGGCGAGATGTGCCCGGCTTG CGGCGATCTGTCTCTCGTGCGGAGAGGCGGAATGACGGTCTGCGACACCTGCGGCGCTCAGTCCGAGCGCCCTGGCCCCG TGGCGTCCACCTGA
Upstream 100 bases:
>100_bases CAGCCGCGCGCCGGTCGCGGCGCACTTCAACATCTTGTGGATTAGCGCCCCTGCACCCGCAACATCTATTGAGGGGCAGT GACCAAGGTTCTAACCTTCG
Downstream 100 bases:
>100_bases CGGCGTTCGCCTGGCGTTAAGCTTGCTAGGTAAGGGTAAGACCTGCTTTTCCGCTCAGGACGTGCGCCAGAATGAAACCG ATCGCCCTGCTCGCCGCCGC
Product: ribonucleotide reductase-like protein
Products: NA
Alternate protein names: Ribonucleoside-diphosphate reductase nrdJ [H]
Number of amino acids: Translated: 937; Mature: 937
Protein sequence:
>937_residues MRPYAHPGRVESHVRDLVSTHAGISDLETPMRPSAKAAGLVPAMEWRDLERADSVQVVSAPSSWSDARVEAWLDWGGEIE PKAPLGGGPARYAARVAQLGLSRGLFGDKADADAFREALLTTMLTGIATPTSGQTGLRLLPDITEFEFQSQARDILGQRR ARLLAAQAAARLNTALDQVADAVRRCSGDSRACSDVRKNPALARAARKARELGADDQTILDAIALADQPRAPLTALAVDD ELPLVAAATRQAVAAGDEAATLAAQVGWETSALTLALSPTDAEALSRGAAIGAAIDASTFLDAEGFDIERFTFVCHLWAT ALELDRGERPARLSLAGVGDCLLSQGYAQTSIEGRDGAAALWALAVGAALSASAEAAATLGQDPAFDQDRQGVLKTLAER RVRAAALRSALATEAAAALATAHALARKHGLRSAGLVGPFADLEATLRLGGSPVGAAGAMAPVSVSQTADGFLMPSFSAA AFEALSSEGVDLDAARRHALGHGSLAESPAIDHAMLQARGFTAHEIEKAENALREHQGVRAAFAPAIVGAGFLRDVLGAS AEDVARRDFDTLAFADFSAAEIAAAERHALGAGTLGDCEALNPDLREAFRSVEAPSFNDRLAMLAAVESFACLPTAVTVS IPHDARPADAVRAQAAAARAGVRALRLQRAPTPYDFKLDLPEEPTAEAPRPAPAREPLVTERVVERIVERDRSRRRLPDR RKGYIQKAAVGGHKVYLHTGEYEDGELGELFIDMHKEGAAFRSLMNNFAIAVSLGLQHGVPLDEFVDAFVYTKFEPAGPV TGNDSIKSATSILDYIFRELGVSYLGRDDLANGDPGQFNADGLGAGKRLAEDDLLDDEADPVPASRFISKGFSRGATPDN LVFASFGHRRVEGADRPGADGEMCPACGDLSLVRRGGMTVCDTCGAQSERPGPVAST
Sequences:
>Translated_937_residues MRPYAHPGRVESHVRDLVSTHAGISDLETPMRPSAKAAGLVPAMEWRDLERADSVQVVSAPSSWSDARVEAWLDWGGEIE PKAPLGGGPARYAARVAQLGLSRGLFGDKADADAFREALLTTMLTGIATPTSGQTGLRLLPDITEFEFQSQARDILGQRR ARLLAAQAAARLNTALDQVADAVRRCSGDSRACSDVRKNPALARAARKARELGADDQTILDAIALADQPRAPLTALAVDD ELPLVAAATRQAVAAGDEAATLAAQVGWETSALTLALSPTDAEALSRGAAIGAAIDASTFLDAEGFDIERFTFVCHLWAT ALELDRGERPARLSLAGVGDCLLSQGYAQTSIEGRDGAAALWALAVGAALSASAEAAATLGQDPAFDQDRQGVLKTLAER RVRAAALRSALATEAAAALATAHALARKHGLRSAGLVGPFADLEATLRLGGSPVGAAGAMAPVSVSQTADGFLMPSFSAA AFEALSSEGVDLDAARRHALGHGSLAESPAIDHAMLQARGFTAHEIEKAENALREHQGVRAAFAPAIVGAGFLRDVLGAS AEDVARRDFDTLAFADFSAAEIAAAERHALGAGTLGDCEALNPDLREAFRSVEAPSFNDRLAMLAAVESFACLPTAVTVS IPHDARPADAVRAQAAAARAGVRALRLQRAPTPYDFKLDLPEEPTAEAPRPAPAREPLVTERVVERIVERDRSRRRLPDR RKGYIQKAAVGGHKVYLHTGEYEDGELGELFIDMHKEGAAFRSLMNNFAIAVSLGLQHGVPLDEFVDAFVYTKFEPAGPV TGNDSIKSATSILDYIFRELGVSYLGRDDLANGDPGQFNADGLGAGKRLAEDDLLDDEADPVPASRFISKGFSRGATPDN LVFASFGHRRVEGADRPGADGEMCPACGDLSLVRRGGMTVCDTCGAQSERPGPVAST >Mature_937_residues MRPYAHPGRVESHVRDLVSTHAGISDLETPMRPSAKAAGLVPAMEWRDLERADSVQVVSAPSSWSDARVEAWLDWGGEIE PKAPLGGGPARYAARVAQLGLSRGLFGDKADADAFREALLTTMLTGIATPTSGQTGLRLLPDITEFEFQSQARDILGQRR ARLLAAQAAARLNTALDQVADAVRRCSGDSRACSDVRKNPALARAARKARELGADDQTILDAIALADQPRAPLTALAVDD ELPLVAAATRQAVAAGDEAATLAAQVGWETSALTLALSPTDAEALSRGAAIGAAIDASTFLDAEGFDIERFTFVCHLWAT ALELDRGERPARLSLAGVGDCLLSQGYAQTSIEGRDGAAALWALAVGAALSASAEAAATLGQDPAFDQDRQGVLKTLAER RVRAAALRSALATEAAAALATAHALARKHGLRSAGLVGPFADLEATLRLGGSPVGAAGAMAPVSVSQTADGFLMPSFSAA AFEALSSEGVDLDAARRHALGHGSLAESPAIDHAMLQARGFTAHEIEKAENALREHQGVRAAFAPAIVGAGFLRDVLGAS AEDVARRDFDTLAFADFSAAEIAAAERHALGAGTLGDCEALNPDLREAFRSVEAPSFNDRLAMLAAVESFACLPTAVTVS IPHDARPADAVRAQAAAARAGVRALRLQRAPTPYDFKLDLPEEPTAEAPRPAPAREPLVTERVVERIVERDRSRRRLPDR RKGYIQKAAVGGHKVYLHTGEYEDGELGELFIDMHKEGAAFRSLMNNFAIAVSLGLQHGVPLDEFVDAFVYTKFEPAGPV TGNDSIKSATSILDYIFRELGVSYLGRDDLANGDPGQFNADGLGAGKRLAEDDLLDDEADPVPASRFISKGFSRGATPDN LVFASFGHRRVEGADRPGADGEMCPACGDLSLVRRGGMTVCDTCGAQSERPGPVAST
Specific function: Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen [H]
COG id: COG0209
COG function: function code F; Ribonucleotide reductase, alpha subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribonucleoside diphosphate reductase class-2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002876 - InterPro: IPR017856 - InterPro: IPR013344 - InterPro: IPR000788 - InterPro: IPR013678 [H]
Pfam domain/function: PF08471 Ribonuc_red_2_N; PF02867 Ribonuc_red_lgC [H]
EC number: =1.17.4.1 [H]
Molecular weight: Translated: 98484; Mature: 98484
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPYAHPGRVESHVRDLVSTHAGISDLETPMRPSAKAAGLVPAMEWRDLERADSVQVVSA CCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCHHCCCCCCHHHHHHHCCCCEEEEEC PSSWSDARVEAWLDWGGEIEPKAPLGGGPARYAARVAQLGLSRGLFGDKADADAFREALL CCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH TTMLTGIATPTSGQTGLRLLPDITEFEFQSQARDILGQRRARLLAAQAAARLNTALDQVA HHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAVRRCSGDSRACSDVRKNPALARAARKARELGADDQTILDAIALADQPRAPLTALAVDD HHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECC ELPLVAAATRQAVAAGDEAATLAAQVGWETSALTLALSPTDAEALSRGAAIGAAIDASTF CCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCHHHHHHCHHHH LDAEGFDIERFTFVCHLWATALELDRGERPARLSLAGVGDCLLSQGYAQTSIEGRDGAAA CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHH LWALAVGAALSASAEAAATLGQDPAFDQDRQGVLKTLAERRVRAAALRSALATEAAAALA HHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAHALARKHGLRSAGLVGPFADLEATLRLGGSPVGAAGAMAPVSVSQTADGFLMPSFSAA HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH AFEALSSEGVDLDAARRHALGHGSLAESPAIDHAMLQARGFTAHEIEKAENALREHQGVR HHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH AAFAPAIVGAGFLRDVLGASAEDVARRDFDTLAFADFSAAEIAAAERHALGAGTLGDCEA HHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC LNPDLREAFRSVEAPSFNDRLAMLAAVESFACLPTAVTVSIPHDARPADAVRAQAAAARA CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHH GVRALRLQRAPTPYDFKLDLPEEPTAEAPRPAPAREPLVTERVVERIVERDRSRRRLPDR HHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH RKGYIQKAAVGGHKVYLHTGEYEDGELGELFIDMHKEGAAFRSLMNNFAIAVSLGLQHGV HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHEEEEEECCCCCC PLDEFVDAFVYTKFEPAGPVTGNDSIKSATSILDYIFRELGVSYLGRDDLANGDPGQFNA CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCC DGLGAGKRLAEDDLLDDEADPVPASRFISKGFSRGATPDNLVFASFGHRRVEGADRPGAD CCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCC GEMCPACGDLSLVRRGGMTVCDTCGAQSERPGPVAST CCCCCCCCCHHHHHHCCCEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MRPYAHPGRVESHVRDLVSTHAGISDLETPMRPSAKAAGLVPAMEWRDLERADSVQVVSA CCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCHHCCCCCCHHHHHHHCCCCEEEEEC PSSWSDARVEAWLDWGGEIEPKAPLGGGPARYAARVAQLGLSRGLFGDKADADAFREALL CCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH TTMLTGIATPTSGQTGLRLLPDITEFEFQSQARDILGQRRARLLAAQAAARLNTALDQVA HHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAVRRCSGDSRACSDVRKNPALARAARKARELGADDQTILDAIALADQPRAPLTALAVDD HHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECC ELPLVAAATRQAVAAGDEAATLAAQVGWETSALTLALSPTDAEALSRGAAIGAAIDASTF CCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCHHHHHHCHHHH LDAEGFDIERFTFVCHLWATALELDRGERPARLSLAGVGDCLLSQGYAQTSIEGRDGAAA CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHH LWALAVGAALSASAEAAATLGQDPAFDQDRQGVLKTLAERRVRAAALRSALATEAAAALA HHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAHALARKHGLRSAGLVGPFADLEATLRLGGSPVGAAGAMAPVSVSQTADGFLMPSFSAA HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH AFEALSSEGVDLDAARRHALGHGSLAESPAIDHAMLQARGFTAHEIEKAENALREHQGVR HHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH AAFAPAIVGAGFLRDVLGASAEDVARRDFDTLAFADFSAAEIAAAERHALGAGTLGDCEA HHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC LNPDLREAFRSVEAPSFNDRLAMLAAVESFACLPTAVTVSIPHDARPADAVRAQAAAARA CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHH GVRALRLQRAPTPYDFKLDLPEEPTAEAPRPAPAREPLVTERVVERIVERDRSRRRLPDR HHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH RKGYIQKAAVGGHKVYLHTGEYEDGELGELFIDMHKEGAAFRSLMNNFAIAVSLGLQHGV HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHEEEEEECCCCCC PLDEFVDAFVYTKFEPAGPVTGNDSIKSATSILDYIFRELGVSYLGRDDLANGDPGQFNA CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCC DGLGAGKRLAEDDLLDDEADPVPASRFISKGFSRGATPDNLVFASFGHRRVEGADRPGAD CCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCC GEMCPACGDLSLVRRGGMTVCDTCGAQSERPGPVAST CCCCCCCCCHHHHHHCCCEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]