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The map label for this gene is recO

Identifier: 16125811

GI number: 16125811

Start: 1727436

End: 1728188

Strand: Direct

Name: recO

Synonym: CC_1564

Alternate gene names: 16125811

Gene position: 1727436-1728188 (Clockwise)

Preceding gene: 16125810

Following gene: 16125812

Centisome position: 43.0

GC content: 69.32

Gene sequence:

>753_bases
GTGGGGAACCCCCGCTTGAGCCTGGAGTGGGAGGACGAAGCCTATGTCCTCTCGGCCCGCTCGCACGGCGAGACGGGGGC
CATTGTCGAACTCCTGACCGAGGCGCGTGGCAAGGTCGCCGCCCACGTGGCCGGCGCGGCCTCGCGGCGGATGAAGCCGT
TCCTGCAGCCCGGCGCGCGGGTGATCGTCCGCTACCGGGCCAAGGTCGAGGGGCAGCTGGGCTCAGCCACTTTGGAGCCG
ATGGGTGAGGGGCCTTCATCCCTGTTCGATGATCGCCTGGCCCTGGCCGGTCTCTCGGCCGCGGCGGCCGTCGCGGCGGC
GGCCTTGCCGGAACGCGAGGCTCACCCCGGCGCGTTCCACGCCCTGGAGGCGCTGATCCGCGTGCTGGAAATCCCCGAGA
TCTGGCCGGCGGTCTATGTCCGCTACGAGGCAGGGCTGTTGCAGGAGCTCGGCTTTGGCCTCGATCTGTCGAAGTGCGCA
GCGACCGGCGCGTTCGACGATCTCGTCTATGTCAGCCCGCGCACCGGGCGGGCCGTCAGTCGTGAAGCGGGCAAGCCCTA
TCACGACAAGCTGTTGCCCTTGCCGCCGTTCATGCTGTCGTCGCAAGGCGGACTGGCTGAGGGCGACGTGAAGGCGGGCC
TGGACATCACCGGCCACTTTCTGGAGCAGTTCGTCTTCGGCCCCCTGAACAGGCCGCTGCCGCCGGCCAGGCTCTGGCTG
TTGGATCGCCTGGCCGAGGCCGATAAGCTCTAA

Upstream 100 bases:

>100_bases
AGCGTGACCTTACCGTTGATGAGCTGGAGGCGACGTTGCGCCAGGTGATCGGCCTGCCGGTGGAGGCCGACTGGCGGCCG
GTGCTGGAACAGGTCGTAGC

Downstream 100 bases:

>100_bases
GAACCGTCACAAAGCGGCGCTATCGCGAATTCTCAGTCTATTGGAGTAACGCCATGTCCGTCCTCGATCGCTACGCCCTG
AGCCGTCGTCGCATGCTGGC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MGNPRLSLEWEDEAYVLSARSHGETGAIVELLTEARGKVAAHVAGAASRRMKPFLQPGARVIVRYRAKVEGQLGSATLEP
MGEGPSSLFDDRLALAGLSAAAAVAAAALPEREAHPGAFHALEALIRVLEIPEIWPAVYVRYEAGLLQELGFGLDLSKCA
ATGAFDDLVYVSPRTGRAVSREAGKPYHDKLLPLPPFMLSSQGGLAEGDVKAGLDITGHFLEQFVFGPLNRPLPPARLWL
LDRLAEADKL

Sequences:

>Translated_250_residues
MGNPRLSLEWEDEAYVLSARSHGETGAIVELLTEARGKVAAHVAGAASRRMKPFLQPGARVIVRYRAKVEGQLGSATLEP
MGEGPSSLFDDRLALAGLSAAAAVAAAALPEREAHPGAFHALEALIRVLEIPEIWPAVYVRYEAGLLQELGFGLDLSKCA
ATGAFDDLVYVSPRTGRAVSREAGKPYHDKLLPLPPFMLSSQGGLAEGDVKAGLDITGHFLEQFVFGPLNRPLPPARLWL
LDRLAEADKL
>Mature_249_residues
GNPRLSLEWEDEAYVLSARSHGETGAIVELLTEARGKVAAHVAGAASRRMKPFLQPGARVIVRYRAKVEGQLGSATLEPM
GEGPSSLFDDRLALAGLSAAAAVAAAALPEREAHPGAFHALEALIRVLEIPEIWPAVYVRYEAGLLQELGFGLDLSKCAA
TGAFDDLVYVSPRTGRAVSREAGKPYHDKLLPLPPFMLSSQGGLAEGDVKAGLDITGHFLEQFVFGPLNRPLPPARLWLL
DRLAEADKL

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_CAUCR (Q9A802)

Other databases:

- EMBL:   AE005673
- PIR:   C87443
- RefSeq:   NP_420375.1
- ProteinModelPortal:   Q9A802
- SMR:   Q9A802
- GeneID:   941916
- GenomeReviews:   AE005673_GR
- KEGG:   ccr:CC_1564
- NMPDR:   fig|190650.1.peg.1555
- TIGR:   CC_1564
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 26781; Mature: 26650

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNPRLSLEWEDEAYVLSARSHGETGAIVELLTEARGKVAAHVAGAASRRMKPFLQPGAR
CCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHH
VIVRYRAKVEGQLGSATLEPMGEGPSSLFDDRLALAGLSAAAAVAAAALPEREAHPGAFH
EEHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
ALEALIRVLEIPEIWPAVYVRYEAGLLQELGFGLDLSKCAATGAFDDLVYVSPRTGRAVS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCCCCHHH
REAGKPYHDKLLPLPPFMLSSQGGLAEGDVKAGLDITGHFLEQFVFGPLNRPLPPARLWL
HHCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH
LDRLAEADKL
HHHHHHHCCC
>Mature Secondary Structure 
GNPRLSLEWEDEAYVLSARSHGETGAIVELLTEARGKVAAHVAGAASRRMKPFLQPGAR
CCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHH
VIVRYRAKVEGQLGSATLEPMGEGPSSLFDDRLALAGLSAAAAVAAAALPEREAHPGAFH
EEHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
ALEALIRVLEIPEIWPAVYVRYEAGLLQELGFGLDLSKCAATGAFDDLVYVSPRTGRAVS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCCCCHHH
REAGKPYHDKLLPLPPFMLSSQGGLAEGDVKAGLDITGHFLEQFVFGPLNRPLPPARLWL
HHCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH
LDRLAEADKL
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11259647