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The map label for this gene is kduI

Identifier: 16125738

GI number: 16125738

Start: 1648988

End: 1649827

Strand: Direct

Name: kduI

Synonym: CC_1491

Alternate gene names: 16125738

Gene position: 1648988-1649827 (Clockwise)

Preceding gene: 16125737

Following gene: 16125739

Centisome position: 41.05

GC content: 63.69

Gene sequence:

>840_bases
ATGTTCGCCAAGACCTATCACGCCACCCATCCGGACATGATGTTCGCGGTCAGCAATGACGACCTGCGCGACCGTTACCT
GATGCAGGGGCTGTTCCAGGACGGCCAGATCGTCCTGACCTACAATCACGCCGAGCGCTTCGTCGTCGGCGGCGTGGTGG
CCACCAGCCCGATCAAGCTGCCCGACCAAACCGAACCCGCTTCGGCCGCCGGCCACCCGTTCCTGGAGCGCCGCGAGCTG
GGCGTGATCAATGTCGGCGACACCACCGGCAAGATCACCGTCGACGGCGTCGCCTACGAGATCGTTCCGCGTGACGGCCT
GTACGTCACCATGGGCGCGAAGGACGTCACCTTCGAAGGCGTCGATGGCGCCGCGCGTTTCTATCTCGTCAGCCTGCCGG
CCCACGCTGCTTTCGAAACCAAGAAGCTGGCCTTCGCCGATGCGATCCCGCTGGAGCGTGGCGCGCTGGAGACCAGCAAC
GAGCGCACGATCTACCAGTACATCGTGCCGACCACCTGTAAGTCGGCTCAGCTGCTGCTGGGCATGACCGTGCTGAAGCC
GGGCAGCGTCTGGAACACCATGCCGCCCCACCTGCACGACCGTCGCTCGGAAGCCTATTTCTACTTCGGTCTGGGCGAGA
ACGACCGGGTCTTCCACTACATGGGCGAGCCGGACGAGATGCGTCACATCGTGATCGCCAACGAGGAAGCCGTGATGAGC
CCGCCGTGGTCGATCCACATGGGCTCGGGCACCGCCAACTACACCTTCATCTGGGCGATGGGCGGCGAGAACCTCGACTA
TACCGACATGAACGTGCTGGACATCTGCCAGCTGAAGTAG

Upstream 100 bases:

>100_bases
GCCCAAGAAGGCCTACAAGCTGGACCAGCGTCCGGACTGGGCCCGTCCCGCCACCCTGCGCGCCGCCGCAGAATAGAACA
CCTTTTCCGGAGACTTCCCG

Downstream 100 bases:

>100_bases
GGGCGAAAGCCTAACCGCTTTGACCGTGTCATCCTGGGCGAAGCGGAGCGAAGACCCGGGACCCAGGGCCGCGCGCTGAG
CGGTGGCCCCTGGGTCCCGG

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MFAKTYHATHPDMMFAVSNDDLRDRYLMQGLFQDGQIVLTYNHAERFVVGGVVATSPIKLPDQTEPASAAGHPFLERREL
GVINVGDTTGKITVDGVAYEIVPRDGLYVTMGAKDVTFEGVDGAARFYLVSLPAHAAFETKKLAFADAIPLERGALETSN
ERTIYQYIVPTTCKSAQLLLGMTVLKPGSVWNTMPPHLHDRRSEAYFYFGLGENDRVFHYMGEPDEMRHIVIANEEAVMS
PPWSIHMGSGTANYTFIWAMGGENLDYTDMNVLDICQLK

Sequences:

>Translated_279_residues
MFAKTYHATHPDMMFAVSNDDLRDRYLMQGLFQDGQIVLTYNHAERFVVGGVVATSPIKLPDQTEPASAAGHPFLERREL
GVINVGDTTGKITVDGVAYEIVPRDGLYVTMGAKDVTFEGVDGAARFYLVSLPAHAAFETKKLAFADAIPLERGALETSN
ERTIYQYIVPTTCKSAQLLLGMTVLKPGSVWNTMPPHLHDRRSEAYFYFGLGENDRVFHYMGEPDEMRHIVIANEEAVMS
PPWSIHMGSGTANYTFIWAMGGENLDYTDMNVLDICQLK
>Mature_279_residues
MFAKTYHATHPDMMFAVSNDDLRDRYLMQGLFQDGQIVLTYNHAERFVVGGVVATSPIKLPDQTEPASAAGHPFLERREL
GVINVGDTTGKITVDGVAYEIVPRDGLYVTMGAKDVTFEGVDGAARFYLVSLPAHAAFETKKLAFADAIPLERGALETSN
ERTIYQYIVPTTCKSAQLLLGMTVLKPGSVWNTMPPHLHDRRSEAYFYFGLGENDRVFHYMGEPDEMRHIVIANEEAVMS
PPWSIHMGSGTANYTFIWAMGGENLDYTDMNVLDICQLK

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family

Homologues:

Organism=Escherichia coli, GI1789209, Length=279, Percent_Identity=43.7275985663082, Blast_Score=235, Evalue=3e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDUI_CAUCN (B8H5V5)

Other databases:

- EMBL:   CP001340
- RefSeq:   YP_002516931.1
- ProteinModelPortal:   B8H5V5
- SMR:   B8H5V5
- GeneID:   7333233
- GenomeReviews:   CP001340_GR
- KEGG:   ccs:CCNA_01558
- OMA:   MPAHTHD
- ProtClustDB:   PRK00924
- HAMAP:   MF_00687
- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120
- PIRSF:   PIRSF006625

Pfam domain/function: PF04962 KduI; SSF51182 RmlC_like_cupin

EC number: =5.3.1.17

Molecular weight: Translated: 31051; Mature: 31051

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAKTYHATHPDMMFAVSNDDLRDRYLMQGLFQDGQIVLTYNHAERFVVGGVVATSPIKL
CCCCEEECCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEEECCCCC
PDQTEPASAAGHPFLERRELGVINVGDTTGKITVDGVAYEIVPRDGLYVTMGAKDVTFEG
CCCCCCCCCCCCCCCHHCCCCEEEECCCCCEEEECCEEEEEEECCCEEEEECCCEEEEEC
VDGAARFYLVSLPAHAAFETKKLAFADAIPLERGALETSNERTIYQYIVPTTCKSAQLLL
CCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEE
GMTVLKPGSVWNTMPPHLHDRRSEAYFYFGLGENDRVFHYMGEPDEMRHIVIANEEAVMS
EEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCEEEEEECCCEEEC
PPWSIHMGSGTANYTFIWAMGGENLDYTDMNVLDICQLK
CCEEEEECCCCCCEEEEEEECCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MFAKTYHATHPDMMFAVSNDDLRDRYLMQGLFQDGQIVLTYNHAERFVVGGVVATSPIKL
CCCCEEECCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEEECCCCC
PDQTEPASAAGHPFLERRELGVINVGDTTGKITVDGVAYEIVPRDGLYVTMGAKDVTFEG
CCCCCCCCCCCCCCCHHCCCCEEEECCCCCEEEECCEEEEEEECCCEEEEECCCEEEEEC
VDGAARFYLVSLPAHAAFETKKLAFADAIPLERGALETSNERTIYQYIVPTTCKSAQLLL
CCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEE
GMTVLKPGSVWNTMPPHLHDRRSEAYFYFGLGENDRVFHYMGEPDEMRHIVIANEEAVMS
EEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCEEEEEECCCEEEC
PPWSIHMGSGTANYTFIWAMGGENLDYTDMNVLDICQLK
CCEEEEECCCCCCEEEEEEECCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA