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The map label for this gene is rbsR [H]

Identifier: 16125736

GI number: 16125736

Start: 1646319

End: 1647392

Strand: Direct

Name: rbsR [H]

Synonym: CC_1489

Alternate gene names: 16125736

Gene position: 1646319-1647392 (Clockwise)

Preceding gene: 16125733

Following gene: 16125737

Centisome position: 40.98

GC content: 65.18

Gene sequence:

>1074_bases
GTGAGCCCCTCCAAGACGCCCTCCACGATCCCGGAAGAAAGTGAGACCGGCGTCGAAGGCGGACGGCGCCGGGCGACGAT
CAATGACATCGCGCGCCTGGCCGGCGTTTCGAAGAAGACGGTTTCCCGGGTCATCAACCAGTCGCCCTTCGTCCGCGACG
AGACCCGCGAGCGCATCGAGGCGGTGATCGCCGAATGGGGCTATGCGCCCGATCCGCAGGCGCGCGGTCTGGCGTTCCGC
CGCTCGTTCCTGATCGGCATGATCTACGACAACCCCAACCCGCAGTACGTCGTGAACATGCAGCTTGGACTGCTGGACGG
CATGCGAGGCTCTGGGTTCGAGCTCGTCGTTCATCCCTGCAATCGCGCCAGCCCCACCTTCTTGACGGACATCCGCGCCT
TCGTTGAACGGCAGAAGCTTTTCGGCGTGGTCTTGCCGCCGTCGGTTTCCGAAGACGAGCGCGTTGCCAAGCTGCTGAAC
GAGATCGGCTGCGCCTACATCCGCATCGCGTCGGTCGAGCTGGACAAGCCCGAACACATGATCGTTGGCCAGGACCGGAT
GGGCGGCGCGCAGGCGGCCCGTCACATCGTCGAGTTGGGGCACAAGCGGATCGCGTTCATCTCCGGTCCGGAGACGTTCC
GTTCGTCGCACGAGCGGCGAGGGGGCTTCGAGGATGGCCTGGCCGAGGCCGGGCTGAGCTTGTCGCCGAACGATATCGTG
CAGGGCGCTTACACCTTCGAGTCGGGCGTCGCCTGTGGCGATGAGCTGCTTTCGCGCTCGCCGCGTCCGACGGCGATCTT
CTGTGGCAACGACGAAATGGCCGCCGGTGTCCTGCAGTCCGCCCGAAAAGCGGGTCTGTCGGTGCCGCAGGACCTCACCG
TGGTCGGGTTCGACGATTTCCAGATCGCGCAGGCGGTGTGGCCGCCTCTGACCACGATCCATACGCCGACGCGCGAGATC
GGCAGGATCGCGGTCGAAAAGCTGATTGGCGATGAGCGCCGCGAACCGCGCGATGTCACTAAGATGGAACCAAATCTGGT
TATCCGGCAGTCTTCCGGGCCGGTTCCGGCCTAG

Upstream 100 bases:

>100_bases
GGTGTCACCGATCTAGCAATCGAATGTTTGTCCATAGGTTGGCGAGGCTTGTCTGGCTGGAGTATGACAAAAGAAAACGC
CCAAAGCTGCTGGAAACCCC

Downstream 100 bases:

>100_bases
GTGAGCGCCACGCGCTGGTGCTTGCATCACGCGATGACACCGGTTACCAAGCGGACACGGGCAGCCGTCGCGAAGCTGTC
AGAGCGTAAGGGAGCAGACG

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MSPSKTPSTIPEESETGVEGGRRRATINDIARLAGVSKKTVSRVINQSPFVRDETRERIEAVIAEWGYAPDPQARGLAFR
RSFLIGMIYDNPNPQYVVNMQLGLLDGMRGSGFELVVHPCNRASPTFLTDIRAFVERQKLFGVVLPPSVSEDERVAKLLN
EIGCAYIRIASVELDKPEHMIVGQDRMGGAQAARHIVELGHKRIAFISGPETFRSSHERRGGFEDGLAEAGLSLSPNDIV
QGAYTFESGVACGDELLSRSPRPTAIFCGNDEMAAGVLQSARKAGLSVPQDLTVVGFDDFQIAQAVWPPLTTIHTPTREI
GRIAVEKLIGDERREPRDVTKMEPNLVIRQSSGPVPA

Sequences:

>Translated_357_residues
MSPSKTPSTIPEESETGVEGGRRRATINDIARLAGVSKKTVSRVINQSPFVRDETRERIEAVIAEWGYAPDPQARGLAFR
RSFLIGMIYDNPNPQYVVNMQLGLLDGMRGSGFELVVHPCNRASPTFLTDIRAFVERQKLFGVVLPPSVSEDERVAKLLN
EIGCAYIRIASVELDKPEHMIVGQDRMGGAQAARHIVELGHKRIAFISGPETFRSSHERRGGFEDGLAEAGLSLSPNDIV
QGAYTFESGVACGDELLSRSPRPTAIFCGNDEMAAGVLQSARKAGLSVPQDLTVVGFDDFQIAQAVWPPLTTIHTPTREI
GRIAVEKLIGDERREPRDVTKMEPNLVIRQSSGPVPA
>Mature_356_residues
SPSKTPSTIPEESETGVEGGRRRATINDIARLAGVSKKTVSRVINQSPFVRDETRERIEAVIAEWGYAPDPQARGLAFRR
SFLIGMIYDNPNPQYVVNMQLGLLDGMRGSGFELVVHPCNRASPTFLTDIRAFVERQKLFGVVLPPSVSEDERVAKLLNE
IGCAYIRIASVELDKPEHMIVGQDRMGGAQAARHIVELGHKRIAFISGPETFRSSHERRGGFEDGLAEAGLSLSPNDIVQ
GAYTFESGVACGDELLSRSPRPTAIFCGNDEMAAGVLQSARKAGLSVPQDLTVVGFDDFQIAQAVWPPLTTIHTPTREIG
RIAVEKLIGDERREPRDVTKMEPNLVIRQSSGPVPA

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=310, Percent_Identity=32.9032258064516, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI1787948, Length=344, Percent_Identity=32.8488372093023, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1790369, Length=345, Percent_Identity=32.463768115942, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1786540, Length=318, Percent_Identity=30.188679245283, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1789202, Length=329, Percent_Identity=28.2674772036474, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788474, Length=335, Percent_Identity=29.5522388059701, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1789068, Length=317, Percent_Identity=28.7066246056782, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1787580, Length=310, Percent_Identity=27.4193548387097, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI48994940, Length=318, Percent_Identity=25.1572327044025, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790715, Length=317, Percent_Identity=25.5520504731861, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787906, Length=319, Percent_Identity=25.0783699059561, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789456, Length=328, Percent_Identity=25.9146341463415, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786268, Length=341, Percent_Identity=24.0469208211144, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790689, Length=326, Percent_Identity=25.1533742331288, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39027; Mature: 38896

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPSKTPSTIPEESETGVEGGRRRATINDIARLAGVSKKTVSRVINQSPFVRDETRERIE
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
AVIAEWGYAPDPQARGLAFRRSFLIGMIYDNPNPQYVVNMQLGLLDGMRGSGFELVVHPC
HHHHHCCCCCCCCCCCHHHHHEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEECC
NRASPTFLTDIRAFVERQKLFGVVLPPSVSEDERVAKLLNEIGCAYIRIASVELDKPEHM
CCCCCHHHHHHHHHHHHHHHCEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCEE
IVGQDRMGGAQAARHIVELGHKRIAFISGPETFRSSHERRGGFEDGLAEAGLSLSPNDIV
EECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHH
QGAYTFESGVACGDELLSRSPRPTAIFCGNDEMAAGVLQSARKAGLSVPQDLTVVGFDDF
CCHHHHHCCCCHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCH
QIAQAVWPPLTTIHTPTREIGRIAVEKLIGDERREPRDVTKMEPNLVIRQSSGPVPA
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEECCCCCCCC
>Mature Secondary Structure 
SPSKTPSTIPEESETGVEGGRRRATINDIARLAGVSKKTVSRVINQSPFVRDETRERIE
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
AVIAEWGYAPDPQARGLAFRRSFLIGMIYDNPNPQYVVNMQLGLLDGMRGSGFELVVHPC
HHHHHCCCCCCCCCCCHHHHHEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEECC
NRASPTFLTDIRAFVERQKLFGVVLPPSVSEDERVAKLLNEIGCAYIRIASVELDKPEHM
CCCCCHHHHHHHHHHHHHHHCEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCEE
IVGQDRMGGAQAARHIVELGHKRIAFISGPETFRSSHERRGGFEDGLAEAGLSLSPNDIV
EECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHH
QGAYTFESGVACGDELLSRSPRPTAIFCGNDEMAAGVLQSARKAGLSVPQDLTVVGFDDF
CCHHHHHCCCCHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCH
QIAQAVWPPLTTIHTPTREIGRIAVEKLIGDERREPRDVTKMEPNLVIRQSSGPVPA
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]