| Definition | Caulobacter crescentus CB15 chromosome, complete genome. |
|---|---|
| Accession | NC_002696 |
| Length | 4,016,947 |
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The map label for this gene is ppdK [H]
Identifier: 16125719
GI number: 16125719
Start: 1620224
End: 1622926
Strand: Direct
Name: ppdK [H]
Synonym: CC_1471
Alternate gene names: 16125719
Gene position: 1620224-1622926 (Clockwise)
Preceding gene: 16125717
Following gene: 16125720
Centisome position: 40.33
GC content: 66.78
Gene sequence:
>2703_bases GTGAATTCAAAGATGCCGGTTGAGACGCTGACCAAGGCCCAGTGGGTTTATGCATTCGGCGGAGGCGGCGCGGATGGCGA CGCCTCGATGAAGAACCTCCTTGGCGGCAAGGGGGCCAATCTCGCGGAGATGTCGTCCCTGGGCCTGCCCGTGCCGCCCG GCTTCACGATTACGACCGAGGCCTGCGTCCACTACTACGCCAACGGCAAGCAGTATCCGGCCGAACTGGCCGAACAGGTG CAGGCTGGCCTCGCCAAGATCGAAGAGATCACCGGCAAGCAGTTCGGCGATGTGACCAACCCGCTGCTGGTTTCGGTGCG CTCGGGCGCCCGGGCCTCGATGCCGGGCATGATGGACACGGTTCTGAACCTGGGCCTCAACGACGAGACCGTCGAAGGGC TGGCCAAGCTGTCGGGCGACCGGCGCTTCGCCTATGACAGCTATCGCCGCTTCATCCAGATGTACTCGAACGTCGTGCTC AACCTCGAGCACCACATGTTCGAGGAGATCCTCGACGATCACAAGGATCGCCTGGACGTCAATGTCGACACCGGTCTGAC GGCCGACGACTGGGCCGCGGTGATCAAGGACTACAAGGCCGCCGTCCGCGAGCAGCTGGGCAAGCCGTTCCCGCAGGACG CCCAGGAGCAACTGTGGGGCGCGGTGGGCGCCGTGTTCGCCAGCTGGATGAACGACCGCGCCAAGTTCTACCGCCGCATG CACGACATCCCCGAAAGCTGGGGCACGGCCGTGAACATCCAGTCGATGGTGTTCGGCAACATGGGCGAGACCTCGGCCAC GGGCGTTGCCTTCACCCGCAACCCGTCGAACGGCGACAACCGCCTGTACGGCGAGTTCCTGATCAACGCCCAGGGCGAGG ACGTGGTGGCGGGCATCCGCACCCCGCAGTCCCTGACCAAGGCCGCCCGCGAGGAGATGGGTGACACCGCCCCCTCGATG GAAGAGGCGATGCCGGAGGTGTTCGGTCAGTTCAAGACGGTCGTGGAGACGCTGGAGCGTCACTACCGCGACATGCAGGA CATCGAGTTCACGGTAGAGCAGGGCAAGCTCTACATGCTGCAGACCCGCAACGGTAAGCGCACCGCCAAGGCCGCGCTCA AAATCGCGGTCGACATGGCGGCCGAGGGCGTGATCTCGACGTCGGAGGCCGTCGGCCGCGTCGAGCCGGCCTCGCTGGAC CAGCTGCTGCACCCGACCATTGATCCGTCGGCCCATCGCGATGTGATCGCCAAGGGCCTGCCGGCCTCGCCCGGCGCAGC GACCGGCAAGATCGTCTTCAACAGCGACGCCGCCGAAAAGGCCGCCGCCAATGGCGAGTCGGTGATCCTCGTACGTGAGG AAACCAGCCCCGAAGACATCCACGGCATGCACGCCGCGCGCGGCATCATCACGGCGCGGGGCGGCATGACCAGCCACGCC GCCGTCGTGGCGCGCGGCATGGGGCGCCCTTGCGTCTCGGGCGCCGGCGATGTGGCCATCTTCGAGAAGGAAGGCCTGTT CCGCGTTCGTGGCCGCGATTTCAGGGCCGGCGAGATCATCACCATCGACGGCTCCACCGGCGACATCCTGGCCGGCGCGC CGAAGATGATCGAGCCCGAGCTGACCGGCGATTTCGCCACCCTGATGGGCTGGGCCGACCAGGTCCGTCGCCTGAAGGTG CGCGCCAACGCCGAGACTCCGCTGGACGCCAAGACCGCCCGCCAGTTCGGCGCCGAGGGCATTGGCCTGTGCCGCACCGA GCACATGTTCTTCGACGACACCCGGATCGCCGCCGTGCGCGAAATGATCCTGGCCGATGACGAGAAGGGCCGCCGCGCCG CGCTGGCCAAGATCGCGCCGTTCCAGAAGGCCGACTTCGTCGAGCTCTTCACGATCATGGAAGGCCTGCCGGTCACGATC CGCCTCCTGGATCCGCCGCTGCACGAGTTCCTGCCGCACACCGAGGAAGACGTTCAGGCCGTGGCCGTGGCCACCGGTCT TGACGCCGCCAAGCTGATGCGTCGCGCCAAGGAGCTGCACGAGACCAACCCCATGCTCGGCCATCGCGGCTGCCGCCTGG GGGTTTCCTATCCCGAGATCTACGAGATGCAGGTCCGCGCCATCCTTGAGGCGGCCTGCGAGGTCAAAAAGGCGGGCAAG CAGCCGCCGGCGCCCGAAATCATGCACCCGCTGGTCGCCAAGGGTGAGGAGATGAAGTACCTGCGCGACCTGACCGACCG CGTCGCTAAGGCGGTGCTGGAAGAGCAGGGCGTGGCGCTGGAGTACACCGTCGGCACCATGATCGAGCTGCCCCGCGCGG CCCTGCGCGCCGGCGACCTGGCCGCCAACGCCGAGTTCTTCAGCTTCGGCACCAACGACCTGACCCAGACGACGTTCGGC ATCAGCCGCGACGACGCCGGCAAGTTCCTGAACGCCTATATCGAGAAGGGCATCTTCGAGAAGGACCCCTTCGTCAGCCT CGACCAGGACGGCGTGGGCGACCTGATCCGTATCGCCGCTGAGCGTGGCCGCGCTGTGCGTCCGAACGTCAAGCTCGGCA TCTGCGGCGAGCATGGCGGCGATCCGGCCTCGATCGGCTTCTGCGAGAAGGTCGGCCTCGACTATGTGTCGTGCTCGCCC TACCGCGTGCCGATCGCACGTCTGGCCGCCGCTCAGGCGGCTATGGCCAACAAGGTCGAGTAG
Upstream 100 bases:
>100_bases AGACGCCCGGATATTGCACTGCGGGATCGCAACAAAGCAGCGCTGTTCCAAGGCGAGACGACCCCCAAAAGAGGGGCGCG GCCTTTTCACTTATCGCAGG
Downstream 100 bases:
>100_bases AAAACGGCGTTATCTAAGCGTCGTGCTCAAGGTCTAAGCTCCCTTCGTACCCGCGTGAGACGGGACGAAGGGAGAAACGA CCAATGCGTATTGCAATGCT
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 900; Mature: 900
Protein sequence:
>900_residues MNSKMPVETLTKAQWVYAFGGGGADGDASMKNLLGGKGANLAEMSSLGLPVPPGFTITTEACVHYYANGKQYPAELAEQV QAGLAKIEEITGKQFGDVTNPLLVSVRSGARASMPGMMDTVLNLGLNDETVEGLAKLSGDRRFAYDSYRRFIQMYSNVVL NLEHHMFEEILDDHKDRLDVNVDTGLTADDWAAVIKDYKAAVREQLGKPFPQDAQEQLWGAVGAVFASWMNDRAKFYRRM HDIPESWGTAVNIQSMVFGNMGETSATGVAFTRNPSNGDNRLYGEFLINAQGEDVVAGIRTPQSLTKAAREEMGDTAPSM EEAMPEVFGQFKTVVETLERHYRDMQDIEFTVEQGKLYMLQTRNGKRTAKAALKIAVDMAAEGVISTSEAVGRVEPASLD QLLHPTIDPSAHRDVIAKGLPASPGAATGKIVFNSDAAEKAAANGESVILVREETSPEDIHGMHAARGIITARGGMTSHA AVVARGMGRPCVSGAGDVAIFEKEGLFRVRGRDFRAGEIITIDGSTGDILAGAPKMIEPELTGDFATLMGWADQVRRLKV RANAETPLDAKTARQFGAEGIGLCRTEHMFFDDTRIAAVREMILADDEKGRRAALAKIAPFQKADFVELFTIMEGLPVTI RLLDPPLHEFLPHTEEDVQAVAVATGLDAAKLMRRAKELHETNPMLGHRGCRLGVSYPEIYEMQVRAILEAACEVKKAGK QPPAPEIMHPLVAKGEEMKYLRDLTDRVAKAVLEEQGVALEYTVGTMIELPRAALRAGDLAANAEFFSFGTNDLTQTTFG ISRDDAGKFLNAYIEKGIFEKDPFVSLDQDGVGDLIRIAAERGRAVRPNVKLGICGEHGGDPASIGFCEKVGLDYVSCSP YRVPIARLAAAQAAMANKVE
Sequences:
>Translated_900_residues MNSKMPVETLTKAQWVYAFGGGGADGDASMKNLLGGKGANLAEMSSLGLPVPPGFTITTEACVHYYANGKQYPAELAEQV QAGLAKIEEITGKQFGDVTNPLLVSVRSGARASMPGMMDTVLNLGLNDETVEGLAKLSGDRRFAYDSYRRFIQMYSNVVL NLEHHMFEEILDDHKDRLDVNVDTGLTADDWAAVIKDYKAAVREQLGKPFPQDAQEQLWGAVGAVFASWMNDRAKFYRRM HDIPESWGTAVNIQSMVFGNMGETSATGVAFTRNPSNGDNRLYGEFLINAQGEDVVAGIRTPQSLTKAAREEMGDTAPSM EEAMPEVFGQFKTVVETLERHYRDMQDIEFTVEQGKLYMLQTRNGKRTAKAALKIAVDMAAEGVISTSEAVGRVEPASLD QLLHPTIDPSAHRDVIAKGLPASPGAATGKIVFNSDAAEKAAANGESVILVREETSPEDIHGMHAARGIITARGGMTSHA AVVARGMGRPCVSGAGDVAIFEKEGLFRVRGRDFRAGEIITIDGSTGDILAGAPKMIEPELTGDFATLMGWADQVRRLKV RANAETPLDAKTARQFGAEGIGLCRTEHMFFDDTRIAAVREMILADDEKGRRAALAKIAPFQKADFVELFTIMEGLPVTI RLLDPPLHEFLPHTEEDVQAVAVATGLDAAKLMRRAKELHETNPMLGHRGCRLGVSYPEIYEMQVRAILEAACEVKKAGK QPPAPEIMHPLVAKGEEMKYLRDLTDRVAKAVLEEQGVALEYTVGTMIELPRAALRAGDLAANAEFFSFGTNDLTQTTFG ISRDDAGKFLNAYIEKGIFEKDPFVSLDQDGVGDLIRIAAERGRAVRPNVKLGICGEHGGDPASIGFCEKVGLDYVSCSP YRVPIARLAAAQAAMANKVE >Mature_900_residues MNSKMPVETLTKAQWVYAFGGGGADGDASMKNLLGGKGANLAEMSSLGLPVPPGFTITTEACVHYYANGKQYPAELAEQV QAGLAKIEEITGKQFGDVTNPLLVSVRSGARASMPGMMDTVLNLGLNDETVEGLAKLSGDRRFAYDSYRRFIQMYSNVVL NLEHHMFEEILDDHKDRLDVNVDTGLTADDWAAVIKDYKAAVREQLGKPFPQDAQEQLWGAVGAVFASWMNDRAKFYRRM HDIPESWGTAVNIQSMVFGNMGETSATGVAFTRNPSNGDNRLYGEFLINAQGEDVVAGIRTPQSLTKAAREEMGDTAPSM EEAMPEVFGQFKTVVETLERHYRDMQDIEFTVEQGKLYMLQTRNGKRTAKAALKIAVDMAAEGVISTSEAVGRVEPASLD QLLHPTIDPSAHRDVIAKGLPASPGAATGKIVFNSDAAEKAAANGESVILVREETSPEDIHGMHAARGIITARGGMTSHA AVVARGMGRPCVSGAGDVAIFEKEGLFRVRGRDFRAGEIITIDGSTGDILAGAPKMIEPELTGDFATLMGWADQVRRLKV RANAETPLDAKTARQFGAEGIGLCRTEHMFFDDTRIAAVREMILADDEKGRRAALAKIAPFQKADFVELFTIMEGLPVTI RLLDPPLHEFLPHTEEDVQAVAVATGLDAAKLMRRAKELHETNPMLGHRGCRLGVSYPEIYEMQVRAILEAACEVKKAGK QPPAPEIMHPLVAKGEEMKYLRDLTDRVAKAVLEEQGVALEYTVGTMIELPRAALRAGDLAANAEFFSFGTNDLTQTTFG ISRDDAGKFLNAYIEKGIFEKDPFVSLDQDGVGDLIRIAAERGRAVRPNVKLGICGEHGGDPASIGFCEKVGLDYVSCSP YRVPIARLAAAQAAMANKVE
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=463, Percent_Identity=26.133909287257, Blast_Score=106, Evalue=8e-24, Organism=Escherichia coli, GI1789193, Length=471, Percent_Identity=24.8407643312102, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI1787994, Length=739, Percent_Identity=24.7631935047361, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1788726, Length=651, Percent_Identity=22.273425499232, Blast_Score=87, Evalue=6e-18, Organism=Escherichia coli, GI48994992, Length=442, Percent_Identity=22.1719457013575, Blast_Score=79, Evalue=2e-15,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 97604; Mature: 97604
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSKMPVETLTKAQWVYAFGGGGADGDASMKNLLGGKGANLAEMSSLGLPVPPGFTITTE CCCCCCHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEHH ACVHYYANGKQYPAELAEQVQAGLAKIEEITGKQFGDVTNPLLVSVRSGARASMPGMMDT HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCEEEECCCCCCCCCHHHHH VLNLGLNDETVEGLAKLSGDRRFAYDSYRRFIQMYSNVVLNLEHHMFEEILDDHKDRLDV HHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCEEE NVDTGLTADDWAAVIKDYKAAVREQLGKPFPQDAQEQLWGAVGAVFASWMNDRAKFYRRM ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH HDIPESWGTAVNIQSMVFGNMGETSATGVAFTRNPSNGDNRLYGEFLINAQGEDVVAGIR HHCHHHHCCEEEEHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCEEEECC TPQSLTKAAREEMGDTAPSMEEAMPEVFGQFKTVVETLERHYRDMQDIEFTVEQGKLYML CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCEEEEE QTRNGKRTAKAALKIAVDMAAEGVISTSEAVGRVEPASLDQLLHPTIDPSAHRDVIAKGL EECCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHCCC PASPGAATGKIVFNSDAAEKAAANGESVILVREETSPEDIHGMHAARGIITARGGMTSHA CCCCCCCCCEEEECCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCEEEECCCCCHHH AVVARGMGRPCVSGAGDVAIFEKEGLFRVRGRDFRAGEIITIDGSTGDILAGAPKMIEPE HHHHHCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEEEEECCCCCEECCCCCCCCCC LTGDFATLMGWADQVRRLKVRANAETPLDAKTARQFGAEGIGLCRTEHMFFDDTRIAAVR CCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHCCCCCCEEEECCEEECCHHHHHHH EMILADDEKGRRAALAKIAPFQKADFVELFTIMEGLPVTIRLLDPPLHEFLPHTEEDVQA HHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHCCCCHHHHHH VAVATGLDAAKLMRRAKELHETNPMLGHRGCRLGVSYPEIYEMQVRAILEAACEVKKAGK HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC QPPAPEIMHPLVAKGEEMKYLRDLTDRVAKAVLEEQGVALEYTVGTMIELPRAALRAGDL CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCH AANAEFFSFGTNDLTQTTFGISRDDAGKFLNAYIEKGIFEKDPFVSLDQDGVGDLIRIAA HCCCHHEECCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH ERGRAVRPNVKLGICGEHGGDPASIGFCEKVGLDYVSCSPYRVPIARLAAAQAAMANKVE HCCCEECCCCEEEECCCCCCCCCCCCHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNSKMPVETLTKAQWVYAFGGGGADGDASMKNLLGGKGANLAEMSSLGLPVPPGFTITTE CCCCCCHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEHH ACVHYYANGKQYPAELAEQVQAGLAKIEEITGKQFGDVTNPLLVSVRSGARASMPGMMDT HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCEEEECCCCCCCCCHHHHH VLNLGLNDETVEGLAKLSGDRRFAYDSYRRFIQMYSNVVLNLEHHMFEEILDDHKDRLDV HHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCEEE NVDTGLTADDWAAVIKDYKAAVREQLGKPFPQDAQEQLWGAVGAVFASWMNDRAKFYRRM ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH HDIPESWGTAVNIQSMVFGNMGETSATGVAFTRNPSNGDNRLYGEFLINAQGEDVVAGIR HHCHHHHCCEEEEHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCEEEECC TPQSLTKAAREEMGDTAPSMEEAMPEVFGQFKTVVETLERHYRDMQDIEFTVEQGKLYML CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCEEEEE QTRNGKRTAKAALKIAVDMAAEGVISTSEAVGRVEPASLDQLLHPTIDPSAHRDVIAKGL EECCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHCCC PASPGAATGKIVFNSDAAEKAAANGESVILVREETSPEDIHGMHAARGIITARGGMTSHA CCCCCCCCCEEEECCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCEEEECCCCCHHH AVVARGMGRPCVSGAGDVAIFEKEGLFRVRGRDFRAGEIITIDGSTGDILAGAPKMIEPE HHHHHCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEEEEECCCCCEECCCCCCCCCC LTGDFATLMGWADQVRRLKVRANAETPLDAKTARQFGAEGIGLCRTEHMFFDDTRIAAVR CCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHCCCCCCEEEECCEEECCHHHHHHH EMILADDEKGRRAALAKIAPFQKADFVELFTIMEGLPVTIRLLDPPLHEFLPHTEEDVQA HHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHCCCCHHHHHH VAVATGLDAAKLMRRAKELHETNPMLGHRGCRLGVSYPEIYEMQVRAILEAACEVKKAGK HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC QPPAPEIMHPLVAKGEEMKYLRDLTDRVAKAVLEEQGVALEYTVGTMIELPRAALRAGDL CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCH AANAEFFSFGTNDLTQTTFGISRDDAGKFLNAYIEKGIFEKDPFVSLDQDGVGDLIRIAA HCCCHHEECCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH ERGRAVRPNVKLGICGEHGGDPASIGFCEKVGLDYVSCSPYRVPIARLAAAQAAMANKVE HCCCEECCCCEEEECCCCCCCCCCCCHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]