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The map label for this gene is yngJ [H]

Identifier: 16125560

GI number: 16125560

Start: 1458672

End: 1459877

Strand: Direct

Name: yngJ [H]

Synonym: CC_1311

Alternate gene names: 16125560

Gene position: 1458672-1459877 (Clockwise)

Preceding gene: 16125559

Following gene: 16125561

Centisome position: 36.31

GC content: 64.59

Gene sequence:

>1206_bases
TTGACGATCCCGGCGCTCCGCTTTGCTGCGGCCGGGATGACAATCAAAAAGAACGGAAACCCAGGGATGGATTTCAACTT
CACCGAAGAGCAGTCGATGGTCCGCGACTCCGTCGCGAGCTTCCTGCAGGACAAGTACGACTTCGACACCCGCCGCAAGA
TCGTCAGCTCGGACGCCGGTTGGCGCGCCGACTACTGGAAGGCCTTCGCCGAGGAGCTGGGCATTCTCGGCGCCTCGTTC
AGCGAGGAGCTGGGCGGCCTGGGCGGCGGCGCCATCGACAATATGATCATCATGGAAGAGTTCGGTAAGGCGCTCGTGAT
CGAGCCCTATCTGGGCACCGTGGTGATCGGCGGCGGCTTCATGAAGCACTCGGGCTACGCCGGCGCGGCCTCGGTCATCG
AGGGCATTGTCGGCGGCTCGACCACCATCGCCTTCGCCTATGCCGAACCGCAGGCCCGCTACACCTGGCAAGACCTGAAG
ACGACGGCCAAGAAGGACGGCTCGGGCTGGGTTCTCAACGGCCACAAGGCCGTCGTGGTCGGCGCGCCGTTCGCCACCCA
CCTGATCGTCACGGCCCGCACGGGCGGCGCCCAGCGCGACGCCGGCGGCGTCGGCGTGTTCATCATCGACAAGAGCCTGC
CGGGCGTCGTGACGCGCGACTATCCGACGGTCGACGGCAACCGCGCGTCGGAAGTCTATTTCGAGAACGTCTCGATCCCG
GCCGAGGCCCTGATCTCGGAAAGCGGTCTGGCCCTGGTCGAACAGGTCATGGACGAGGCCATCGCCGCCGTCGGCGCCGA
GGCTGTGGGCGTGCTGCGCAAGCTGCACGAGGGCACTCTGGACTACGCCAAGCAGCGCAAGCAGTTCGGCACCGCCATCG
CCAACTTCCAGGTGCTGCAACACCGCATGGTCGACATGTTCATCGAGGTCGAGCAATCGGTGTCGATGACCTACATGGCG
ACGATCAAGGTTGGCGAGAGCGCCGCCGAACGCGCCAAGGCCGTCTCGGCCATGAAGGTGCGCATCGGTCGCGCCTGCAA
GTTCGTGGGCCAAAGCGCCATCCAGATCCATGGCGGCATGGGCATGACCGACGAACTGGCGATCGGCCACTACTTCAAGC
GCGCGACGATGATCGAAGGCCTGTTCGGCTCTGTTGATCATCATCTGAAGCGTTACGAATCCCTGTCGTTCGACGCGGCC
GCCTAA

Upstream 100 bases:

>100_bases
CCAGCGCAACATCATCGCCAAGATGGTGCTGGGCCTCTAACGCGGGCTGTCATCCCGGGCGCGCCGGAGGCGTGACCCGG
GACCACCCAATTCACCGACA

Downstream 100 bases:

>100_bases
GGGCGTCTACGGACCAACAGGTTCAAGTGTTGAAGCCGCCTGCGTCATGGCGACGCGGGCGGTTTTTTTCATGCGCCATG
CTCCTGAACCATTCGCCTCA

Product: acyl-CoA dehydrogenase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MTIPALRFAAAGMTIKKNGNPGMDFNFTEEQSMVRDSVASFLQDKYDFDTRRKIVSSDAGWRADYWKAFAEELGILGASF
SEELGGLGGGAIDNMIIMEEFGKALVIEPYLGTVVIGGGFMKHSGYAGAASVIEGIVGGSTTIAFAYAEPQARYTWQDLK
TTAKKDGSGWVLNGHKAVVVGAPFATHLIVTARTGGAQRDAGGVGVFIIDKSLPGVVTRDYPTVDGNRASEVYFENVSIP
AEALISESGLALVEQVMDEAIAAVGAEAVGVLRKLHEGTLDYAKQRKQFGTAIANFQVLQHRMVDMFIEVEQSVSMTYMA
TIKVGESAAERAKAVSAMKVRIGRACKFVGQSAIQIHGGMGMTDELAIGHYFKRATMIEGLFGSVDHHLKRYESLSFDAA
A

Sequences:

>Translated_401_residues
MTIPALRFAAAGMTIKKNGNPGMDFNFTEEQSMVRDSVASFLQDKYDFDTRRKIVSSDAGWRADYWKAFAEELGILGASF
SEELGGLGGGAIDNMIIMEEFGKALVIEPYLGTVVIGGGFMKHSGYAGAASVIEGIVGGSTTIAFAYAEPQARYTWQDLK
TTAKKDGSGWVLNGHKAVVVGAPFATHLIVTARTGGAQRDAGGVGVFIIDKSLPGVVTRDYPTVDGNRASEVYFENVSIP
AEALISESGLALVEQVMDEAIAAVGAEAVGVLRKLHEGTLDYAKQRKQFGTAIANFQVLQHRMVDMFIEVEQSVSMTYMA
TIKVGESAAERAKAVSAMKVRIGRACKFVGQSAIQIHGGMGMTDELAIGHYFKRATMIEGLFGSVDHHLKRYESLSFDAA
A
>Mature_400_residues
TIPALRFAAAGMTIKKNGNPGMDFNFTEEQSMVRDSVASFLQDKYDFDTRRKIVSSDAGWRADYWKAFAEELGILGASFS
EELGGLGGGAIDNMIIMEEFGKALVIEPYLGTVVIGGGFMKHSGYAGAASVIEGIVGGSTTIAFAYAEPQARYTWQDLKT
TAKKDGSGWVLNGHKAVVVGAPFATHLIVTARTGGAQRDAGGVGVFIIDKSLPGVVTRDYPTVDGNRASEVYFENVSIPA
EALISESGLALVEQVMDEAIAAVGAEAVGVLRKLHEGTLDYAKQRKQFGTAIANFQVLQHRMVDMFIEVEQSVSMTYMAT
IKVGESAAERAKAVSAMKVRIGRACKFVGQSAIQIHGGMGMTDELAIGHYFKRATMIEGLFGSVDHHLKRYESLSFDAAA

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=370, Percent_Identity=25.4054054054054, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI4501857, Length=410, Percent_Identity=24.6341463414634, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI4557233, Length=338, Percent_Identity=25.4437869822485, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI226958414, Length=335, Percent_Identity=25.6716417910448, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI4501859, Length=380, Percent_Identity=25.2631578947368, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI4557231, Length=380, Percent_Identity=23.6842105263158, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI187960098, Length=380, Percent_Identity=23.6842105263158, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI21361497, Length=346, Percent_Identity=24.2774566473988, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI4557235, Length=326, Percent_Identity=23.9263803680982, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI76496475, Length=326, Percent_Identity=23.9263803680982, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI7656849, Length=251, Percent_Identity=26.6932270916335, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI87081958, Length=366, Percent_Identity=24.8633879781421, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786223, Length=365, Percent_Identity=26.3013698630137, Blast_Score=83, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17538396, Length=373, Percent_Identity=25.7372654155496, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17569725, Length=376, Percent_Identity=25, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17534899, Length=376, Percent_Identity=25.531914893617, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17570075, Length=383, Percent_Identity=25.8485639686684, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17506239, Length=329, Percent_Identity=24.3161094224924, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17508101, Length=328, Percent_Identity=24.6951219512195, Blast_Score=88, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI71985184, Length=235, Percent_Identity=26.8085106382979, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71990804, Length=273, Percent_Identity=26.3736263736264, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71982178, Length=247, Percent_Identity=26.7206477732794, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71985192, Length=188, Percent_Identity=26.5957446808511, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI32563615, Length=234, Percent_Identity=26.0683760683761, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17505929, Length=311, Percent_Identity=23.1511254019293, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17551932, Length=308, Percent_Identity=25, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17533517, Length=235, Percent_Identity=22.1276595744681, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24666513, Length=385, Percent_Identity=26.7532467532467, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI21355753, Length=382, Percent_Identity=26.7015706806283, Blast_Score=111, Evalue=9e-25,
Organism=Drosophila melanogaster, GI21356377, Length=322, Percent_Identity=27.3291925465839, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24660351, Length=378, Percent_Identity=25.9259259259259, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24646207, Length=321, Percent_Identity=26.1682242990654, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI281363737, Length=315, Percent_Identity=25.7142857142857, Blast_Score=79, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42997; Mature: 42865

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPALRFAAAGMTIKKNGNPGMDFNFTEEQSMVRDSVASFLQDKYDFDTRRKIVSSDAG
CCCCCHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
WRADYWKAFAEELGILGASFSEELGGLGGGAIDNMIIMEEFGKALVIEPYLGTVVIGGGF
CCHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEECCCC
MKHSGYAGAASVIEGIVGGSTTIAFAYAEPQARYTWQDLKTTAKKDGSGWVLNGHKAVVV
EECCCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEHHHHHHHHCCCCCCEEEECCEEEEE
GAPFATHLIVTARTGGAQRDAGGVGVFIIDKSLPGVVTRDYPTVDGNRASEVYFENVSIP
ECCHHHEEEEEEECCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEECCCCC
AEALISESGLALVEQVMDEAIAAVGAEAVGVLRKLHEGTLDYAKQRKQFGTAIANFQVLQ
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRMVDMFIEVEQSVSMTYMATIKVGESAAERAKAVSAMKVRIGRACKFVGQSAIQIHGGM
HHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
GMTDELAIGHYFKRATMIEGLFGSVDHHLKRYESLSFDAAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TIPALRFAAAGMTIKKNGNPGMDFNFTEEQSMVRDSVASFLQDKYDFDTRRKIVSSDAG
CCCCHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
WRADYWKAFAEELGILGASFSEELGGLGGGAIDNMIIMEEFGKALVIEPYLGTVVIGGGF
CCHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEECCCC
MKHSGYAGAASVIEGIVGGSTTIAFAYAEPQARYTWQDLKTTAKKDGSGWVLNGHKAVVV
EECCCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEHHHHHHHHCCCCCCEEEECCEEEEE
GAPFATHLIVTARTGGAQRDAGGVGVFIIDKSLPGVVTRDYPTVDGNRASEVYFENVSIP
ECCHHHEEEEEEECCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEECCCCC
AEALISESGLALVEQVMDEAIAAVGAEAVGVLRKLHEGTLDYAKQRKQFGTAIANFQVLQ
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRMVDMFIEVEQSVSMTYMATIKVGESAAERAKAVSAMKVRIGRACKFVGQSAIQIHGGM
HHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
GMTDELAIGHYFKRATMIEGLFGSVDHHLKRYESLSFDAAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]