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The map label for this gene is ompW [C]

Identifier: 16125536

GI number: 16125536

Start: 1433738

End: 1434418

Strand: Direct

Name: ompW [C]

Synonym: CC_1287

Alternate gene names: 16125536

Gene position: 1433738-1434418 (Clockwise)

Preceding gene: 16125535

Following gene: 16125537

Centisome position: 35.69

GC content: 66.81

Gene sequence:

>681_bases
ATGAATAAGCAAGGGACATTCGTCGCGGTCGCCACGTCGATCTTGGCCATGGCCGCCGCCGGGAGCGCGAGCGCGGCCGA
AAGCGGCAAATTCCAGATCAAGGCCTTCGCGACCAAGGTTGCCGTCGACGGCGCCATCACGAAGGTGAAGGTCGATCAGC
TGCGCTTGCCGGCGGGCGCGGACACCCGCGCCAAGGACGCGTGGGTCCCGACCGTGGCGGCCGAATACTTCTTCTCGCCC
CGGGTTTCGGTCGAGACGATCTGCTGCGTCACCCAGCACGACGTTCGGGGCAGCGGCCCGCTGAACGGTGCGGCGCTCGT
CGACAACGCCGAGGTCATCCCGGCCACGGTGACGGTGAAGTACCACTTCCCGCTTTCGAGCGGCGTTAAGCCCTATGTCG
GCGCGGGGCCGGCCTATTTCATGGTGTTCGGCGAGAAGGTCGGCGCCAGCGCCCGCGCTCTGGGTGCGACCAAGGTGGGC
CTGTCCAGTGAACTGGGCGCGGCTCTCCAAGCGGGCGTTGACATCCCGCTGCCCGGCAAGGCGGTCGGCCTCAGCATTGA
CGTGAAGCGCTATTTCGTCGACACCACCGCGCAGTTCCGCGCCGGAGATCGCGTCGTGCTCGAGACCAAACACAAGCTTG
ACCCGTGGGTGGCCAGCGCGGGTGTGGCATGGCGCTTCTAA

Upstream 100 bases:

>100_bases
CGCTGTAATCAGCCGTTCATCCAGCCGACAGCCTCGGTTCACGGCGGGTCTCTAGCTCTTGTCCTGTGGGCGCAGGCCCG
ATCCCCAAGGATAGGAACTC

Downstream 100 bases:

>100_bases
TCCAGGGACGCGGCCGTCGCGCCGCCCTTGGTCTGACGCTGGCGAGCCTTGCGCTCGCCAGCGCCGGTACCGCCTACGCT
GCGGACGAGGACGGCCAAAT

Product: outer membrane protein OmpW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNKQGTFVAVATSILAMAAAGSASAAESGKFQIKAFATKVAVDGAITKVKVDQLRLPAGADTRAKDAWVPTVAAEYFFSP
RVSVETICCVTQHDVRGSGPLNGAALVDNAEVIPATVTVKYHFPLSSGVKPYVGAGPAYFMVFGEKVGASARALGATKVG
LSSELGAALQAGVDIPLPGKAVGLSIDVKRYFVDTTAQFRAGDRVVLETKHKLDPWVASAGVAWRF

Sequences:

>Translated_226_residues
MNKQGTFVAVATSILAMAAAGSASAAESGKFQIKAFATKVAVDGAITKVKVDQLRLPAGADTRAKDAWVPTVAAEYFFSP
RVSVETICCVTQHDVRGSGPLNGAALVDNAEVIPATVTVKYHFPLSSGVKPYVGAGPAYFMVFGEKVGASARALGATKVG
LSSELGAALQAGVDIPLPGKAVGLSIDVKRYFVDTTAQFRAGDRVVLETKHKLDPWVASAGVAWRF
>Mature_226_residues
MNKQGTFVAVATSILAMAAAGSASAAESGKFQIKAFATKVAVDGAITKVKVDQLRLPAGADTRAKDAWVPTVAAEYFFSP
RVSVETICCVTQHDVRGSGPLNGAALVDNAEVIPATVTVKYHFPLSSGVKPYVGAGPAYFMVFGEKVGASARALGATKVG
LSSELGAALQAGVDIPLPGKAVGLSIDVKRYFVDTTAQFRAGDRVVLETKHKLDPWVASAGVAWRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 23485; Mature: 23485

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKQGTFVAVATSILAMAAAGSASAAESGKFQIKAFATKVAVDGAITKVKVDQLRLPAGA
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEECCCCC
DTRAKDAWVPTVAAEYFFSPRVSVETICCVTQHDVRGSGPLNGAALVDNAEVIPATVTVK
CCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCEEEECCCEEEEEEEEEE
YHFPLSSGVKPYVGAGPAYFMVFGEKVGASARALGATKVGLSSELGAALQAGVDIPLPGK
EECCCCCCCCCCCCCCCEEEEEEECCCCCCCHHCCCEECCCCHHHHHHHHCCCCCCCCCC
AVGLSIDVKRYFVDTTAQFRAGDRVVLETKHKLDPWVASAGVAWRF
EEEEEEEEEEEEECCCHHHCCCCEEEEEECCCCCCHHHCCCEEECC
>Mature Secondary Structure
MNKQGTFVAVATSILAMAAAGSASAAESGKFQIKAFATKVAVDGAITKVKVDQLRLPAGA
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEECCCCC
DTRAKDAWVPTVAAEYFFSPRVSVETICCVTQHDVRGSGPLNGAALVDNAEVIPATVTVK
CCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCEEEECCCEEEEEEEEEE
YHFPLSSGVKPYVGAGPAYFMVFGEKVGASARALGATKVGLSSELGAALQAGVDIPLPGK
EECCCCCCCCCCCCCCCEEEEEEECCCCCCCHHCCCEECCCCHHHHHHHHCCCCCCCCCC
AVGLSIDVKRYFVDTTAQFRAGDRVVLETKHKLDPWVASAGVAWRF
EEEEEEEEEEEEECCCHHHCCCCEEEEEECCCCCCHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]