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The map label for this gene is yvrB [H]

Identifier: 16125443

GI number: 16125443

Start: 1351406

End: 1352446

Strand: Direct

Name: yvrB [H]

Synonym: CC_1192

Alternate gene names: 16125443

Gene position: 1351406-1352446 (Clockwise)

Preceding gene: 16125442

Following gene: 16125444

Centisome position: 33.64

GC content: 72.72

Gene sequence:

>1041_bases
GTGCTCGGCCTGGTTCGCCGCCGACGCGGCGCTCGTTCTGGCCAGGGCCGCGCGATGAGCATTCCGCGTCTGTGCTTGCT
GATGGCCCTGGCGTTGGCGCTCGCGGCCGCTCTGGCCATCACCCTGGGCGAGACGGCCTTTTCTCTGAGCCAGTATGGCC
AGGCCTTGCTGCTGCCCGCCTCGCCGCCGGGTGAAGTGCTTTGGACCATCCGTGCGCCGCGCGTGACGGTTGCGGCCCTG
GTCGGCGCGGCGCTCGGCATGGCCGGGGCGACCCTGCAGGGGCTGCTGCGCAATCCGCTGGCGGATCCAGGCGTCTTGGG
CGTTTCGGCCGTTTCGGGCCTGGGCGCGGCCTTGGCGATCTCGGCGGGCCTTGCGGTGCTGCCCGGCGCGATCGAGCTGT
CGGCCCTGGCCGGGGCGCTGGTTGCGGGCGGCACCGTGGTCGTCGTGGCGGCGCGCTTTCGCGAGCCCGAAGCGCTGATC
CTGTTCGGGGTGGCGCTGTCGGCCCTTGGCGGGGCCCTGACCGCCCTGGTGTTCAACCTTTCGCCGTCACCGGTCGCCAC
GGCCGAGATCCTGGCCTGGCTGATGGGCTCGGTGGAGAACCGTGACCTGATGGATGCGCTACGGGCGCTGGTCCCGATGG
CCATCGGCGCTTTGCTGTGTCTGCGCGCCGGCGCAGGGCTGCGCATGCTGACCCTGGGCGAGGACGCAGCGCGGATGTCG
GCCCTGCCGATGGCGCGTCTGCGGATCTATGCGGTGGCCGGCTCGGCCTTACTGACCGGGGCGGCGGTGGCGGCTTCGGG
CGTGATCGGCTTTGTGGGCTTGGCCGCGCCGCATCTGGTGCGGGCGCTGGTCAGGGACGATCCCAAGCGGATCCTCTGGC
CCGCCGCCCTGGCCGGGGCCCTGCTGGTGGTGCTGGCGGACCTGGCCGCGCGAATGATCCCGACCGAGCAGGAACTGAAG
CTGGGCGTCGTCACCGCGCTGTTCGGCGCGCCCGTCTTCGCGCTGCTGGCCTGGCGCGCCGCGCGGAGCTGGCGGTCATG
A

Upstream 100 bases:

>100_bases
CGCGGGCCGGCGCGGACCGCTGGGGACCTGGACGGCACGCGGCCCTGCGTCGGGCGGTGGAGACGCGCGCCGTCGCTGAG
CTGCCCGCCGCCATGGTCGG

Downstream 100 bases:

>100_bases
GCGCGCTGTGGACCCTGAAGGACCTGTCGGCGCGGCAAGGGCGCAAGACCGTCCTGCAAGCCGCTTCGCTGTCGGTCTCG
GCCGGGGAAGTGGTCGGCGT

Product: iron compound ABC transporter permease

Products: ADP; phosphate; cob(I)alamin [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MLGLVRRRRGARSGQGRAMSIPRLCLLMALALALAAALAITLGETAFSLSQYGQALLLPASPPGEVLWTIRAPRVTVAAL
VGAALGMAGATLQGLLRNPLADPGVLGVSAVSGLGAALAISAGLAVLPGAIELSALAGALVAGGTVVVVAARFREPEALI
LFGVALSALGGALTALVFNLSPSPVATAEILAWLMGSVENRDLMDALRALVPMAIGALLCLRAGAGLRMLTLGEDAARMS
ALPMARLRIYAVAGSALLTGAAVAASGVIGFVGLAAPHLVRALVRDDPKRILWPAALAGALLVVLADLAARMIPTEQELK
LGVVTALFGAPVFALLAWRAARSWRS

Sequences:

>Translated_346_residues
MLGLVRRRRGARSGQGRAMSIPRLCLLMALALALAAALAITLGETAFSLSQYGQALLLPASPPGEVLWTIRAPRVTVAAL
VGAALGMAGATLQGLLRNPLADPGVLGVSAVSGLGAALAISAGLAVLPGAIELSALAGALVAGGTVVVVAARFREPEALI
LFGVALSALGGALTALVFNLSPSPVATAEILAWLMGSVENRDLMDALRALVPMAIGALLCLRAGAGLRMLTLGEDAARMS
ALPMARLRIYAVAGSALLTGAAVAASGVIGFVGLAAPHLVRALVRDDPKRILWPAALAGALLVVLADLAARMIPTEQELK
LGVVTALFGAPVFALLAWRAARSWRS
>Mature_346_residues
MLGLVRRRRGARSGQGRAMSIPRLCLLMALALALAAALAITLGETAFSLSQYGQALLLPASPPGEVLWTIRAPRVTVAAL
VGAALGMAGATLQGLLRNPLADPGVLGVSAVSGLGAALAISAGLAVLPGAIELSALAGALVAGGTVVVVAARFREPEALI
LFGVALSALGGALTALVFNLSPSPVATAEILAWLMGSVENRDLMDALRALVPMAIGALLCLRAGAGLRMLTLGEDAARMS
ALPMARLRIYAVAGSALLTGAAVAASGVIGFVGLAAPHLVRALVRDDPKRILWPAALAGALLVVLADLAARMIPTEQELK
LGVVTALFGAPVFALLAWRAARSWRS

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788004, Length=284, Percent_Identity=39.0845070422535, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1790740, Length=275, Percent_Identity=38.9090909090909, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1790741, Length=285, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1786805, Length=279, Percent_Identity=37.6344086021505, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786347, Length=323, Percent_Identity=33.1269349845201, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786804, Length=271, Percent_Identity=32.8413284132841, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 35019; Mature: 35019

Theoretical pI: Translated: 11.79; Mature: 11.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGLVRRRRGARSGQGRAMSIPRLCLLMALALALAAALAITLGETAFSLSQYGQALLLPA
CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
SPPGEVLWTIRAPRVTVAALVGAALGMAGATLQGLLRNPLADPGVLGVSAVSGLGAALAI
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
SAGLAVLPGAIELSALAGALVAGGTVVVVAARFREPEALILFGVALSALGGALTALVFNL
HCCHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC
SPSPVATAEILAWLMGSVENRDLMDALRALVPMAIGALLCLRAGAGLRMLTLGEDAARMS
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
ALPMARLRIYAVAGSALLTGAAVAASGVIGFVGLAAPHLVRALVRDDPKRILWPAALAGA
HCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LLVVLADLAARMIPTEQELKLGVVTALFGAPVFALLAWRAARSWRS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLGLVRRRRGARSGQGRAMSIPRLCLLMALALALAAALAITLGETAFSLSQYGQALLLPA
CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
SPPGEVLWTIRAPRVTVAALVGAALGMAGATLQGLLRNPLADPGVLGVSAVSGLGAALAI
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
SAGLAVLPGAIELSALAGALVAGGTVVVVAARFREPEALILFGVALSALGGALTALVFNL
HCCHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC
SPSPVATAEILAWLMGSVENRDLMDALRALVPMAIGALLCLRAGAGLRMLTLGEDAARMS
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
ALPMARLRIYAVAGSALLTGAAVAASGVIGFVGLAAPHLVRALVRDDPKRILWPAALAGA
HCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LLVVLADLAARMIPTEQELKLGVVTALFGAPVFALLAWRAARSWRS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; cob(I)alamin [Periplasm]; H2O [C]

Specific reaction: ATP + cob(I)alamin [Periplasm] + H2O = ADP + phosphate + cob(I)alamin [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]