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The map label for this gene is yiaD [H]

Identifier: 16124456

GI number: 16124456

Start: 215418

End: 216098

Strand: Direct

Name: yiaD [H]

Synonym: CC_0201

Alternate gene names: 16124456

Gene position: 215418-216098 (Clockwise)

Preceding gene: 16124454

Following gene: 16124457

Centisome position: 5.36

GC content: 68.87

Gene sequence:

>681_bases
ATGCCGAAATTCGCTCGAAAAATGACGCTGGCGGTGGTGCTGATGAGCGCCGGCGCCTTGGCCGCCTGCACCACCACCGA
TCCCTATACGGGCATGCCGGTCCGTAACAACACCGGCACGGGCGCGCTGACCGGCGCCGGCGTCGGCGCAGTGCTGGGCT
ATCTGACCAACACCAACAAGGGCGAGCAGGGCCGCAAGAACGCCCTGATCGGCGCGGGCATCGGCGCGCTGGCCGGCGGC
GCCATCGGCAACTACATGGACCGCCAGCAGGCCGACTTCCGTCGCAGCCTGGAAGGCTCGGGCGTGATGATCCGCCGCAA
TGGCGACCAGATCGTGCTGGTCATGCCCAGCGACGTGACCTTCGCGGTCGACCGTTCGGACGTGCAGCCCCCGTTCACCC
GCGTGCTGGACGACGTGGCCCGCACCCTGAACGCCTATCCGCAGACCACGATCGACGTGGTCGGTCACGCCGATTCCAGC
GGTCCGGACGATTACAATCAGACTCTCTCGGAGCGCCGCGCCAGCGCCGTCGCCGGCTATCTGACCGGACCTGGCGGCGT
GCTTGTCGACCGCGTCTTCGTCGCCGGCATGGGCGAGCGCGCGCCGATCGCCGACAACGCCACCGCCGACGGCCGCGCCC
AGAACCGCCGGGTCGAGATCATTCTGCGTCCCCTGACCTGA

Upstream 100 bases:

>100_bases
GCTGTTCGTTTCCGGGCGGCGTTGTGGTCGGGAACTTGACCATAAGACGGGCGTTTGCCCGGGTGACTTGATCTACAACA
AAGATGCGAGGGTTGCGACC

Downstream 100 bases:

>100_bases
TGGCTCTACGGGGCGGCGTTCGCGCGCCGCCCCGCCCCTTAGGGGCATCAAGCGGTTGCTTTTCCCGCGCTTCGTCGCCA
AGTCGTCATCCTTCAAGGGC

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MPKFARKMTLAVVLMSAGALAACTTTDPYTGMPVRNNTGTGALTGAGVGAVLGYLTNTNKGEQGRKNALIGAGIGALAGG
AIGNYMDRQQADFRRSLEGSGVMIRRNGDQIVLVMPSDVTFAVDRSDVQPPFTRVLDDVARTLNAYPQTTIDVVGHADSS
GPDDYNQTLSERRASAVAGYLTGPGGVLVDRVFVAGMGERAPIADNATADGRAQNRRVEIILRPLT

Sequences:

>Translated_226_residues
MPKFARKMTLAVVLMSAGALAACTTTDPYTGMPVRNNTGTGALTGAGVGAVLGYLTNTNKGEQGRKNALIGAGIGALAGG
AIGNYMDRQQADFRRSLEGSGVMIRRNGDQIVLVMPSDVTFAVDRSDVQPPFTRVLDDVARTLNAYPQTTIDVVGHADSS
GPDDYNQTLSERRASAVAGYLTGPGGVLVDRVFVAGMGERAPIADNATADGRAQNRRVEIILRPLT
>Mature_225_residues
PKFARKMTLAVVLMSAGALAACTTTDPYTGMPVRNNTGTGALTGAGVGAVLGYLTNTNKGEQGRKNALIGAGIGALAGGA
IGNYMDRQQADFRRSLEGSGVMIRRNGDQIVLVMPSDVTFAVDRSDVQPPFTRVLDDVARTLNAYPQTTIDVVGHADSSG
PDDYNQTLSERRASAVAGYLTGPGGVLVDRVFVAGMGERAPIADNATADGRAQNRRVEIILRPLT

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=220, Percent_Identity=40, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1786962, Length=103, Percent_Identity=34.9514563106796, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787191, Length=122, Percent_Identity=35.2459016393443, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788957, Length=104, Percent_Identity=33.6538461538462, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23655; Mature: 23524

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFARKMTLAVVLMSAGALAACTTTDPYTGMPVRNNTGTGALTGAGVGAVLGYLTNTNK
CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
GEQGRKNALIGAGIGALAGGAIGNYMDRQQADFRRSLEGSGVMIRRNGDQIVLVMPSDVT
CCCCCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCEE
FAVDRSDVQPPFTRVLDDVARTLNAYPQTTIDVVGHADSSGPDDYNQTLSERRASAVAGY
EEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHE
LTGPGGVLVDRVFVAGMGERAPIADNATADGRAQNRRVEIILRPLT
EECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
PKFARKMTLAVVLMSAGALAACTTTDPYTGMPVRNNTGTGALTGAGVGAVLGYLTNTNK
CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
GEQGRKNALIGAGIGALAGGAIGNYMDRQQADFRRSLEGSGVMIRRNGDQIVLVMPSDVT
CCCCCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCEE
FAVDRSDVQPPFTRVLDDVARTLNAYPQTTIDVVGHADSSGPDDYNQTLSERRASAVAGY
EEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHE
LTGPGGVLVDRVFVAGMGERAPIADNATADGRAQNRRVEIILRPLT
EECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]