| Definition | Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence. |
|---|---|
| Accession | NC_002608 |
| Length | 365,425 |
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Identifier: 16120261
GI number: 16120261
Start: 293341
End: 293988
Strand: Reverse
Name: Not Available
Synonym: VNG6364H
Alternate gene names: NA
Gene position: 293988-293341 (Counterclockwise)
Preceding gene: 16120262
Following gene: 16120260
Centisome position: 80.45
GC content: 52.16
Gene sequence:
>648_bases ATGCCCATCGAAGTTGAGTGTGATTTCTGTGGTGAGACAATCTCAAGACCTCCGTCGGTAGTGGAGCGTGCAGAGCACCA CTTCTGCGATAAGACGTGTCAGGGGAATTGGCGGTCTGAACAAAAGGACAATAGAGTCGTCCTCCAATGCGACTACTGTG GGACGGATTTCAAACGATACGAGTGGAATCTCAAAGACGATCAGACAAACCAGTTCTGTAGCAACGAGTGTAGGGGACGA TGGCAGATAGAAAATCGTCCACAGACAGAATGTACAAACTGCGGCGAGACAATCGGGCGGATTCAGTACGATATCGAATC AGCTGATCGCCATTTCTGCAGTCGGGACTGTCAGTGGGAATGGCAGCAGGAGACAGCTACCTACGATTGGGAATCAACCC CGAACTATGGACCGCTATGGAAAGAGCGGCGTGAACAGGTCTTAGAGCGAGATAATCGAACCTGCCAGGGGTGTGGTCGT AGCGAAAACGAGCTCGGATATACGCCGCGAGTACATCATATTCGGCCGTTCGCGGAGTTCGATGAGGATGAGGTCGAAGC TGCTCACGATCCATCGAATCTAGTCTCGCTCTGTGAGCCTTGTCACACCAGATGGGAAGGCGTCCCGCTTCGTCCGAAAT TGCTCTGA
Upstream 100 bases:
>100_bases TTCAGTGAAGTCCAAATATAAAGGGCCGGTCAACCCGGACGAATAGCCCCGGACATTCATCAGTGATGCCGGTTGCTAAT GGGCGGCGAAAGGCCGACCC
Downstream 100 bases:
>100_bases GAACAGGTCCGGAGGAAGATACCTTGCTCAGGACAGAACTCGACGAGATGCCGCAGAGTATGGATGGCCCGTCAACCCGG ACGAGTAAAACTCGATGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 215; Mature: 214
Protein sequence:
>215_residues MPIEVECDFCGETISRPPSVVERAEHHFCDKTCQGNWRSEQKDNRVVLQCDYCGTDFKRYEWNLKDDQTNQFCSNECRGR WQIENRPQTECTNCGETIGRIQYDIESADRHFCSRDCQWEWQQETATYDWESTPNYGPLWKERREQVLERDNRTCQGCGR SENELGYTPRVHHIRPFAEFDEDEVEAAHDPSNLVSLCEPCHTRWEGVPLRPKLL
Sequences:
>Translated_215_residues MPIEVECDFCGETISRPPSVVERAEHHFCDKTCQGNWRSEQKDNRVVLQCDYCGTDFKRYEWNLKDDQTNQFCSNECRGR WQIENRPQTECTNCGETIGRIQYDIESADRHFCSRDCQWEWQQETATYDWESTPNYGPLWKERREQVLERDNRTCQGCGR SENELGYTPRVHHIRPFAEFDEDEVEAAHDPSNLVSLCEPCHTRWEGVPLRPKLL >Mature_214_residues PIEVECDFCGETISRPPSVVERAEHHFCDKTCQGNWRSEQKDNRVVLQCDYCGTDFKRYEWNLKDDQTNQFCSNECRGRW QIENRPQTECTNCGETIGRIQYDIESADRHFCSRDCQWEWQQETATYDWESTPNYGPLWKERREQVLERDNRTCQGCGRS ENELGYTPRVHHIRPFAEFDEDEVEAAHDPSNLVSLCEPCHTRWEGVPLRPKLL
Specific function: Unknown
COG id: COG1403
COG function: function code V; Restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25475; Mature: 25344
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
7.4 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 7.9 %Cys+Met (Translated Protein) 7.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 7.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIEVECDFCGETISRPPSVVERAEHHFCDKTCQGNWRSEQKDNRVVLQCDYCGTDFKRY CCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHE EWNLKDDQTNQFCSNECRGRWQIENRPQTECTNCGETIGRIQYDIESADRHFCSRDCQWE ECCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE WQQETATYDWESTPNYGPLWKERREQVLERDNRTCQGCGRSENELGYTPRVHHIRPFAEF ECCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCHHHC DEDEVEAAHDPSNLVSLCEPCHTRWEGVPLRPKLL CHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure PIEVECDFCGETISRPPSVVERAEHHFCDKTCQGNWRSEQKDNRVVLQCDYCGTDFKRY CEEEECCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHE EWNLKDDQTNQFCSNECRGRWQIENRPQTECTNCGETIGRIQYDIESADRHFCSRDCQWE ECCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE WQQETATYDWESTPNYGPLWKERREQVLERDNRTCQGCGRSENELGYTPRVHHIRPFAEF ECCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCHHHC DEDEVEAAHDPSNLVSLCEPCHTRWEGVPLRPKLL CHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA