| Definition | Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence. |
|---|---|
| Accession | NC_002608 |
| Length | 365,425 |
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Identifier: 16120145
GI number: 16120145
Start: 167863
End: 168282
Strand: Direct
Name: Not Available
Synonym: VNG6205C
Alternate gene names: NA
Gene position: 167863-168282 (Clockwise)
Preceding gene: 16120144
Following gene: 16120146
Centisome position: 45.94
GC content: 66.43
Gene sequence:
>420_bases ATGGCAGTTCTTGTCCCCTACGACGGATCGAGTCCCGCACACGACGCCGTCGAACACGCCGTTGAGACGCACGACACCGA CGAACTCGTGCTCCTGCACGTCACCGAGCTCGCGGACGGGATGCTCGACGCCGGCGTGGACATCGTCCAAGAGCAGCTGA AAGGCCTCCAGAATCCGGCCAGCAGCGAGGGACTCACCGAGGAGACCCAGGCCCTCCTGGAGGACGCGGCGCTCTCGTTC CGGATGGAGACGACAGTGGGGAACCCGGCGCGTGAGATCGTCTCGTTCGCGGAGGACAACGACATCACCGAGATCGTCAT GGGGAGCCACGGGCGGCGTGGTGTCTCCCGTGTGCTGCTTGGGAGCGTCGCCGAAACGGTGGTGCGGCGCGCCCCGACGA CCGTGACAGTCGTTCGGTGA
Upstream 100 bases:
>100_bases CGCCGGGAACTGCCTGGTCGTCAGGCCCCCACAACGCGGAGTGACTGGGCGCTGGTCACACAACAGCGCGTTTTATGTGG AGTGCTCGGCGAGGGTGCGT
Downstream 100 bases:
>100_bases GGGCGGCTCACAGGTGAGAGGGGATCCGTGCTGTGGGGTCGGATGTAGCCGGACGCCCCACCATCGATGTGTAACGGCGG GTCCATCGGTCAAGCACTGG
Product: hypothetical protein
Products: NA
Alternate protein names: USP MJ0577 [H]
Number of amino acids: Translated: 139; Mature: 138
Protein sequence:
>139_residues MAVLVPYDGSSPAHDAVEHAVETHDTDELVLLHVTELADGMLDAGVDIVQEQLKGLQNPASSEGLTEETQALLEDAALSF RMETTVGNPAREIVSFAEDNDITEIVMGSHGRRGVSRVLLGSVAETVVRRAPTTVTVVR
Sequences:
>Translated_139_residues MAVLVPYDGSSPAHDAVEHAVETHDTDELVLLHVTELADGMLDAGVDIVQEQLKGLQNPASSEGLTEETQALLEDAALSF RMETTVGNPAREIVSFAEDNDITEIVMGSHGRRGVSRVLLGSVAETVVRRAPTTVTVVR >Mature_138_residues AVLVPYDGSSPAHDAVEHAVETHDTDELVLLHVTELADGMLDAGVDIVQEQLKGLQNPASSEGLTEETQALLEDAALSFR METTVGNPAREIVSFAEDNDITEIVMGSHGRRGVSRVLLGSVAETVVRRAPTTVTVVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the universal stress protein A family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014729 - InterPro: IPR006015 - InterPro: IPR006016 [H]
Pfam domain/function: PF00582 Usp [H]
EC number: NA
Molecular weight: Translated: 14846; Mature: 14715
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVLVPYDGSSPAHDAVEHAVETHDTDELVLLHVTELADGMLDAGVDIVQEQLKGLQNPA CEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHCCCC SSEGLTEETQALLEDAALSFRMETTVGNPAREIVSFAEDNDITEIVMGSHGRRGVSRVLL CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHH GSVAETVVRRAPTTVTVVR HHHHHHHHHCCCCEEEEEC >Mature Secondary Structure AVLVPYDGSSPAHDAVEHAVETHDTDELVLLHVTELADGMLDAGVDIVQEQLKGLQNPA EEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHCCCC SSEGLTEETQALLEDAALSFRMETTVGNPAREIVSFAEDNDITEIVMGSHGRRGVSRVLL CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHH GSVAETVVRRAPTTVTVVR HHHHHHHHHCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087; 9860944 [H]