BacMap

Definition	Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence.
Accession	NC_002608
Length	365,425

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The map label for this gene is cdc48d

Identifier: 16120141

GI number: 16120141

Start: 164190

End: 166403

Strand: Reverse

Name: cdc48d

Synonym: VNG6199G

Alternate gene names: 16120141

Gene position: 166403-164190 (Counterclockwise)

Preceding gene: 16120142

Following gene: 16120137

Centisome position: 45.54

GC content: 63.28

Gene sequence:

>2214_bases
ATGCGACTTACGGTCAAACAACTCAAGAACCGCGATCCAGGGAGCGGTATGGCCGTCATCGACCGCGATGCGCTTCAGGA
GATCGGCGTCAGCAGTGGCGACTTCGTCGCGATCGAGGGCCGCAACGGCGGACGAACGGTCGCCCGCGTCTGGCCTAGTA
ACACGAGCGACGCGGGTCGCGGTATCATCCGAATCGACGGCCAGCTCCGACAGGCAGCGAACGTCAGCATCGACGACCGC
GTCGAGGTCGAGAAAACGGAGGTCGAGCCGGCGGACCGAGTTACCGTCTCCCTACCACAGAATCTTCAGATCAGAGGAGA
TCTCGGCTCGCACCTCCGCGAACATCTCGTCGACCAGGCGGTGAGGGCAGGACAGACGGTCGCGTTCCCGATCGGGTTTG
GTATGTTCTCCGGTCGGTCTGGTCGACGCATTCCCCTACGGGTGGTCGATACGCAGCCCAGCGGGACGGTCGTCGTGCAG
AACACGACCGAGATCGAGATCGCCGACCAGAGCGCCCAGGAGGTCTCCGTCGAATCGGGAGAACCGGAAAATACGACCGC
TCCAGCCCTCACGTACGAGGACATCGGCGGCCTCGACGACGAACTCGAGCAGGTTCGGGAGATGATCGAGTTGCCGATGC
GCCACCCCGAGCTGTTCGGGACGCTCGGCATCGAACCGCCGAAGGGCGTTCTCCTCCACGGTCCTCCCGGGACGGGGAAG
ACCCTGATCGCCAAGGCCGTCGCCAACGAAATCGACGCTCACTTCCAGACGATCTCTGGCCCGGAGATCATGAGCAAGTA
CTACGGCGAGAGCGAAGAGCAGCTTCGCGACGTGTTCGAGGAGGCCGAGGAGAACGCGCCCGCGATCGTCTTCATTGACG
AACTCGACTCCATCGCGCCCAAGCGCGAAGACGTCAGTGGCGATGTCGAACGCCGGGTCGTCGCCCAGTTGCTCTCGCTG
ATGGACGGCCTCGAAGAGCGCGGCCAGCTCACGGTTATCGGCACGACCAACCGCGTCGATGCCGTGGATCCGGCGCTCCG
CCGTCCCGGTCGGTTCGATCGTGAAATCGAGATCGGCGTCCCCGACCATGACGGGCGCGAAAAGATCCTTCAGATCCACA
CGCGCGGGATGCCTCTCGGCGACGGCGTCGATCTCGACCGGTACGCTGAGAATACTCAAGGTTTCGTCGGCGCAGATCTC
GAGAACCTCGTGAAAGAGAGCGCGATGCACGCGCTTCGCCGGATTCGGCCCGATCTGGATCTCGACGAAGAAGAGATCCC
CGCCGACATCCTCGACTCGATAGAGGTGACCGAGAACGACTTCAAAGAGGCGCTGAGGGGCATCGAACCCTCCGCGCTGC
GAGAGGTATTCGTCGAGGTCCCCGATGTCACCTGGGACCACGTCGGTGGTCTCGATGATGCGAAGGAACGCCTCCAGGAG
ACCGTCCAGTGGCCCCTCGAACACGCCGACGCCTACGAGCAAGTCGCACTCGAACCGGCGAAGGGCGTCTTGCTCTACGG
GCCGCCCGGCACCGGGAAGACGCTGCTTGCGAAGGCCGTTGCTAACGAGGCGAACTCGAACTTCATCTCGATCAAGGGGC
CTGAGCTGTTCAACAAGTACGTCGGCGAGTCCGAGAGGGGCGTTCGTGAAGTGTTCTCGAAGGCCCGCGAGAACGCCCCC
ACGGTGGTGTTCTTCGACGAGATCGACGCGATCGCCTCGGAACGTGGCCAGGGCGTTGGCGACTCGAACGTCGGCGAACG
CGTGGTCTCACAGCTGCTGACCGAACTCGACGGTCTCGAAGAACTCGAGGACATCGTAGTGATCGCCACGACGAACCGCC
CAGACCTCATCGACGATGCCTTGCTCCGACCGGGACGGCTCGACCGTCACGTCGCAGTCGACGAGCCCGACGAAGCGGCA
CGGCGTGAGATCTTCGAGATCCACACCGAGGACAAGCCGCTGGCCGAAGATGTCGACGTCGACGAACTCGTCGAGCGGAC
TGACGGCTACGTCGGTGCCGATATCGAGGCGGTCTGCCGCGAGGCTGCGACGGTCGCCGTCCGCGAATACGTCCGTGCGA
CTGCGAGTGCCGAATCGGCCAACGTCGACGAAATCGAGCTGTCAATAGAGCACTTCGAGCAGGCGCTCGAAGAGGTCGAC
TCAAACGCTGGATCCGAAACGCAGGCGTTCGAAAAGCCAGCTGAAGCCGTGTAG

Upstream 100 bases:

>100_bases
CCACCCGCGGCAAGCAGATCGAGGTCCAGGCCTGACATCGCCTCGGACAGGAGTACTGACCGACAGCCGCTTTCTTCCGT
GAGTAATCGAGGTGAGAGCC

Downstream 100 bases:

>100_bases
CACTGGTGACTCTCCCTTACGTAGTTGAATCGTCGGCTTGATCCGATCGAGGTTCACCGGCTTCTTCGAGTTGTTCGGTC
ACACGTTGGTCAATCTGTTC

Product: cell division cycle protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 737; Mature: 737

Protein sequence:

>737_residues
MRLTVKQLKNRDPGSGMAVIDRDALQEIGVSSGDFVAIEGRNGGRTVARVWPSNTSDAGRGIIRIDGQLRQAANVSIDDR
VEVEKTEVEPADRVTVSLPQNLQIRGDLGSHLREHLVDQAVRAGQTVAFPIGFGMFSGRSGRRIPLRVVDTQPSGTVVVQ
NTTEIEIADQSAQEVSVESGEPENTTAPALTYEDIGGLDDELEQVREMIELPMRHPELFGTLGIEPPKGVLLHGPPGTGK
TLIAKAVANEIDAHFQTISGPEIMSKYYGESEEQLRDVFEEAEENAPAIVFIDELDSIAPKREDVSGDVERRVVAQLLSL
MDGLEERGQLTVIGTTNRVDAVDPALRRPGRFDREIEIGVPDHDGREKILQIHTRGMPLGDGVDLDRYAENTQGFVGADL
ENLVKESAMHALRRIRPDLDLDEEEIPADILDSIEVTENDFKEALRGIEPSALREVFVEVPDVTWDHVGGLDDAKERLQE
TVQWPLEHADAYEQVALEPAKGVLLYGPPGTGKTLLAKAVANEANSNFISIKGPELFNKYVGESERGVREVFSKARENAP
TVVFFDEIDAIASERGQGVGDSNVGERVVSQLLTELDGLEELEDIVVIATTNRPDLIDDALLRPGRLDRHVAVDEPDEAA
RREIFEIHTEDKPLAEDVDVDELVERTDGYVGADIEAVCREAATVAVREYVRATASAESANVDEIELSIEHFEQALEEVD
SNAGSETQAFEKPAEAV

Sequences:

>Translated_737_residues
MRLTVKQLKNRDPGSGMAVIDRDALQEIGVSSGDFVAIEGRNGGRTVARVWPSNTSDAGRGIIRIDGQLRQAANVSIDDR
VEVEKTEVEPADRVTVSLPQNLQIRGDLGSHLREHLVDQAVRAGQTVAFPIGFGMFSGRSGRRIPLRVVDTQPSGTVVVQ
NTTEIEIADQSAQEVSVESGEPENTTAPALTYEDIGGLDDELEQVREMIELPMRHPELFGTLGIEPPKGVLLHGPPGTGK
TLIAKAVANEIDAHFQTISGPEIMSKYYGESEEQLRDVFEEAEENAPAIVFIDELDSIAPKREDVSGDVERRVVAQLLSL
MDGLEERGQLTVIGTTNRVDAVDPALRRPGRFDREIEIGVPDHDGREKILQIHTRGMPLGDGVDLDRYAENTQGFVGADL
ENLVKESAMHALRRIRPDLDLDEEEIPADILDSIEVTENDFKEALRGIEPSALREVFVEVPDVTWDHVGGLDDAKERLQE
TVQWPLEHADAYEQVALEPAKGVLLYGPPGTGKTLLAKAVANEANSNFISIKGPELFNKYVGESERGVREVFSKARENAP
TVVFFDEIDAIASERGQGVGDSNVGERVVSQLLTELDGLEELEDIVVIATTNRPDLIDDALLRPGRLDRHVAVDEPDEAA
RREIFEIHTEDKPLAEDVDVDELVERTDGYVGADIEAVCREAATVAVREYVRATASAESANVDEIELSIEHFEQALEEVD
SNAGSETQAFEKPAEAV
>Mature_737_residues
MRLTVKQLKNRDPGSGMAVIDRDALQEIGVSSGDFVAIEGRNGGRTVARVWPSNTSDAGRGIIRIDGQLRQAANVSIDDR
VEVEKTEVEPADRVTVSLPQNLQIRGDLGSHLREHLVDQAVRAGQTVAFPIGFGMFSGRSGRRIPLRVVDTQPSGTVVVQ
NTTEIEIADQSAQEVSVESGEPENTTAPALTYEDIGGLDDELEQVREMIELPMRHPELFGTLGIEPPKGVLLHGPPGTGK
TLIAKAVANEIDAHFQTISGPEIMSKYYGESEEQLRDVFEEAEENAPAIVFIDELDSIAPKREDVSGDVERRVVAQLLSL
MDGLEERGQLTVIGTTNRVDAVDPALRRPGRFDREIEIGVPDHDGREKILQIHTRGMPLGDGVDLDRYAENTQGFVGADL
ENLVKESAMHALRRIRPDLDLDEEEIPADILDSIEVTENDFKEALRGIEPSALREVFVEVPDVTWDHVGGLDDAKERLQE
TVQWPLEHADAYEQVALEPAKGVLLYGPPGTGKTLLAKAVANEANSNFISIKGPELFNKYVGESERGVREVFSKARENAP
TVVFFDEIDAIASERGQGVGDSNVGERVVSQLLTELDGLEELEDIVVIATTNRPDLIDDALLRPGRLDRHVAVDEPDEAA
RREIFEIHTEDKPLAEDVDVDELVERTDGYVGADIEAVCREAATVAVREYVRATASAESANVDEIELSIEHFEQALEEVD
SNAGSETQAFEKPAEAV

Specific function: Seems To Act As An ATP-Dependent Zinc Metallopeptidase. Involved In The Degradation Of Sigma-32. Degrades Carboxy- Terminal-Tagged Cytoplasmic Proteins. These Proteins Are Tagged With An 11-Amino-Acid Nonpolar Destabilizing Tail VIa A Mechanism Involving

COG id: COG0464

COG function: function code O; ATPases of the AAA+ class

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family. CDC48 subfamily [H]

Homologues:

Organism=Homo sapiens, GI6005942, Length=689, Percent_Identity=46.2989840348331, Blast_Score=602, Evalue=1e-172,
Organism=Homo sapiens, GI157671927, Length=535, Percent_Identity=51.4018691588785, Blast_Score=566, Evalue=1e-161,
Organism=Homo sapiens, GI45643125, Length=589, Percent_Identity=44.9915110356537, Blast_Score=482, Evalue=1e-136,
Organism=Homo sapiens, GI45643123, Length=599, Percent_Identity=44.5742904841402, Blast_Score=482, Evalue=1e-136,
Organism=Homo sapiens, GI229577436, Length=769, Percent_Identity=34.3302990897269, Blast_Score=402, Evalue=1e-112,
Organism=Homo sapiens, GI4505725, Length=556, Percent_Identity=34.1726618705036, Blast_Score=285, Evalue=1e-76,
Organism=Homo sapiens, GI194018488, Length=498, Percent_Identity=36.144578313253, Blast_Score=279, Evalue=8e-75,
Organism=Homo sapiens, GI24497618, Length=274, Percent_Identity=42.3357664233577, Blast_Score=243, Evalue=5e-64,
Organism=Homo sapiens, GI153792536, Length=276, Percent_Identity=42.7536231884058, Blast_Score=237, Evalue=3e-62,
Organism=Homo sapiens, GI24430151, Length=261, Percent_Identity=44.8275862068966, Blast_Score=229, Evalue=5e-60,
Organism=Homo sapiens, GI24430155, Length=231, Percent_Identity=46.3203463203463, Blast_Score=219, Evalue=7e-57,
Organism=Homo sapiens, GI5729991, Length=231, Percent_Identity=46.3203463203463, Blast_Score=219, Evalue=7e-57,
Organism=Homo sapiens, GI89064750, Length=231, Percent_Identity=46.3203463203463, Blast_Score=219, Evalue=9e-57,
Organism=Homo sapiens, GI24497435, Length=261, Percent_Identity=44.4444444444444, Blast_Score=219, Evalue=9e-57,
Organism=Homo sapiens, GI21361144, Length=230, Percent_Identity=46.5217391304348, Blast_Score=214, Evalue=2e-55,
Organism=Homo sapiens, GI4506209, Length=276, Percent_Identity=41.304347826087, Blast_Score=209, Evalue=7e-54,
Organism=Homo sapiens, GI195539395, Length=228, Percent_Identity=42.1052631578947, Blast_Score=207, Evalue=3e-53,
Organism=Homo sapiens, GI156564401, Length=565, Percent_Identity=30.6194690265487, Blast_Score=201, Evalue=2e-51,
Organism=Homo sapiens, GI300192933, Length=275, Percent_Identity=40.3636363636364, Blast_Score=199, Evalue=1e-50,
Organism=Homo sapiens, GI310125280, Length=248, Percent_Identity=41.5322580645161, Blast_Score=186, Evalue=6e-47,
Organism=Homo sapiens, GI310125282, Length=257, Percent_Identity=40.8560311284047, Blast_Score=186, Evalue=8e-47,
Organism=Homo sapiens, GI226371754, Length=273, Percent_Identity=38.0952380952381, Blast_Score=186, Evalue=9e-47,
Organism=Homo sapiens, GI5901990, Length=291, Percent_Identity=37.8006872852234, Blast_Score=183, Evalue=5e-46,
Organism=Homo sapiens, GI4507173, Length=279, Percent_Identity=39.426523297491, Blast_Score=182, Evalue=8e-46,
Organism=Homo sapiens, GI14149767, Length=291, Percent_Identity=36.426116838488, Blast_Score=178, Evalue=1e-44,
Organism=Homo sapiens, GI62177112, Length=291, Percent_Identity=36.426116838488, Blast_Score=178, Evalue=1e-44,
Organism=Homo sapiens, GI21327685, Length=223, Percent_Identity=41.7040358744395, Blast_Score=176, Evalue=6e-44,
Organism=Homo sapiens, GI7657689, Length=223, Percent_Identity=41.7040358744395, Blast_Score=176, Evalue=7e-44,
Organism=Homo sapiens, GI31742536, Length=285, Percent_Identity=33.6842105263158, Blast_Score=172, Evalue=1e-42,
Organism=Homo sapiens, GI112789543, Length=285, Percent_Identity=33.6842105263158, Blast_Score=172, Evalue=1e-42,
Organism=Homo sapiens, GI7019569, Length=242, Percent_Identity=36.7768595041322, Blast_Score=169, Evalue=1e-41,
Organism=Homo sapiens, GI31377644, Length=246, Percent_Identity=37.8048780487805, Blast_Score=168, Evalue=2e-41,
Organism=Homo sapiens, GI17865802, Length=243, Percent_Identity=39.5061728395062, Blast_Score=167, Evalue=3e-41,
Organism=Homo sapiens, GI40806170, Length=273, Percent_Identity=35.1648351648352, Blast_Score=158, Evalue=1e-38,
Organism=Homo sapiens, GI11875211, Length=273, Percent_Identity=35.1648351648352, Blast_Score=158, Evalue=2e-38,
Organism=Homo sapiens, GI64084766, Length=231, Percent_Identity=33.7662337662338, Blast_Score=134, Evalue=3e-31,
Organism=Homo sapiens, GI40806173, Length=161, Percent_Identity=38.5093167701863, Blast_Score=107, Evalue=5e-23,
Organism=Homo sapiens, GI116292174, Length=251, Percent_Identity=29.4820717131474, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI40255052, Length=206, Percent_Identity=26.6990291262136, Blast_Score=71, Evalue=4e-12,
Organism=Homo sapiens, GI11321607, Length=162, Percent_Identity=30.8641975308642, Blast_Score=70, Evalue=7e-12,
Organism=Escherichia coli, GI1789568, Length=226, Percent_Identity=46.4601769911504, Blast_Score=200, Evalue=4e-52,
Organism=Caenorhabditis elegans, GI17532375, Length=736, Percent_Identity=44.0217391304348, Blast_Score=603, Evalue=1e-172,
Organism=Caenorhabditis elegans, GI17531535, Length=738, Percent_Identity=42.5474254742547, Blast_Score=571, Evalue=1e-163,
Organism=Caenorhabditis elegans, GI17537217, Length=564, Percent_Identity=40.4255319148936, Blast_Score=404, Evalue=1e-113,
Organism=Caenorhabditis elegans, GI17508053, Length=531, Percent_Identity=37.6647834274953, Blast_Score=314, Evalue=1e-85,
Organism=Caenorhabditis elegans, GI193206116, Length=322, Percent_Identity=38.8198757763975, Blast_Score=230, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI133931034, Length=322, Percent_Identity=38.8198757763975, Blast_Score=230, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI193206114, Length=322, Percent_Identity=38.8198757763975, Blast_Score=229, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI17563250, Length=233, Percent_Identity=46.7811158798283, Blast_Score=226, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI25144278, Length=261, Percent_Identity=44.8275862068966, Blast_Score=224, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI17554786, Length=261, Percent_Identity=44.8275862068966, Blast_Score=224, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI25144281, Length=261, Percent_Identity=44.8275862068966, Blast_Score=224, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI71987364, Length=262, Percent_Identity=41.9847328244275, Blast_Score=216, Evalue=4e-56,
Organism=Caenorhabditis elegans, GI71987372, Length=262, Percent_Identity=41.9847328244275, Blast_Score=216, Evalue=5e-56,
Organism=Caenorhabditis elegans, GI17563248, Length=278, Percent_Identity=43.8848920863309, Blast_Score=214, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI25153574, Length=497, Percent_Identity=30.3822937625755, Blast_Score=213, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17554784, Length=259, Percent_Identity=43.6293436293436, Blast_Score=212, Evalue=7e-55,
Organism=Caenorhabditis elegans, GI17562804, Length=479, Percent_Identity=31.5240083507307, Blast_Score=211, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17505546, Length=241, Percent_Identity=43.1535269709544, Blast_Score=210, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17508701, Length=261, Percent_Identity=41.3793103448276, Blast_Score=209, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI193209502, Length=244, Percent_Identity=42.6229508196721, Blast_Score=202, Evalue=6e-52,
Organism=Caenorhabditis elegans, GI133901662, Length=307, Percent_Identity=36.8078175895765, Blast_Score=182, Evalue=5e-46,
Organism=Caenorhabditis elegans, GI133901658, Length=446, Percent_Identity=32.7354260089686, Blast_Score=182, Evalue=5e-46,
Organism=Caenorhabditis elegans, GI71994521, Length=277, Percent_Identity=41.5162454873646, Blast_Score=180, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI25146157, Length=239, Percent_Identity=38.0753138075314, Blast_Score=164, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI17554264, Length=235, Percent_Identity=40, Blast_Score=160, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI86561515, Length=242, Percent_Identity=36.7768595041322, Blast_Score=158, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17508421, Length=321, Percent_Identity=34.8909657320872, Blast_Score=156, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI32563584, Length=324, Percent_Identity=35.1851851851852, Blast_Score=156, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI115534323, Length=233, Percent_Identity=38.6266094420601, Blast_Score=151, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17560432, Length=269, Percent_Identity=37.546468401487, Blast_Score=145, Evalue=9e-35,
Organism=Caenorhabditis elegans, GI17541226, Length=255, Percent_Identity=32.9411764705882, Blast_Score=142, Evalue=8e-34,
Organism=Caenorhabditis elegans, GI17541224, Length=255, Percent_Identity=32.9411764705882, Blast_Score=142, Evalue=9e-34,
Organism=Caenorhabditis elegans, GI17570397, Length=146, Percent_Identity=34.9315068493151, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI32566590, Length=146, Percent_Identity=34.9315068493151, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71990294, Length=373, Percent_Identity=25.201072386059, Blast_Score=70, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6320077, Length=688, Percent_Identity=46.5116279069767, Blast_Score=592, Evalue=1e-170,
Organism=Saccharomyces cerevisiae, GI6323429, Length=748, Percent_Identity=39.7058823529412, Blast_Score=518, Evalue=1e-147,
Organism=Saccharomyces cerevisiae, GI6322994, Length=565, Percent_Identity=42.3008849557522, Blast_Score=446, Evalue=1e-126,
Organism=Saccharomyces cerevisiae, GI6321709, Length=272, Percent_Identity=45.9558823529412, Blast_Score=244, Evalue=5e-65,
Organism=Saccharomyces cerevisiae, GI6324000, Length=509, Percent_Identity=33.0058939096267, Blast_Score=243, Evalue=1e-64,
Organism=Saccharomyces cerevisiae, GI6322651, Length=500, Percent_Identity=30.6, Blast_Score=242, Evalue=2e-64,
Organism=Saccharomyces cerevisiae, GI6321390, Length=319, Percent_Identity=40.1253918495298, Blast_Score=229, Evalue=2e-60,
Organism=Saccharomyces cerevisiae, GI6320197, Length=261, Percent_Identity=43.2950191570881, Blast_Score=219, Evalue=1e-57,
Organism=Saccharomyces cerevisiae, GI6320602, Length=253, Percent_Identity=46.2450592885375, Blast_Score=216, Evalue=1e-56,
Organism=Saccharomyces cerevisiae, GI6322704, Length=229, Percent_Identity=43.6681222707424, Blast_Score=211, Evalue=5e-55,
Organism=Saccharomyces cerevisiae, GI6324691, Length=229, Percent_Identity=45.8515283842795, Blast_Score=209, Evalue=2e-54,
Organism=Saccharomyces cerevisiae, GI6324833, Length=245, Percent_Identity=42.8571428571429, Blast_Score=208, Evalue=2e-54,
Organism=Saccharomyces cerevisiae, GI6320854, Length=279, Percent_Identity=39.7849462365591, Blast_Score=206, Evalue=7e-54,
Organism=Saccharomyces cerevisiae, GI6323736, Length=261, Percent_Identity=42.5287356321839, Blast_Score=199, Evalue=1e-51,
Organism=Saccharomyces cerevisiae, GI6319554, Length=407, Percent_Identity=32.6781326781327, Blast_Score=189, Evalue=9e-49,
Organism=Saccharomyces cerevisiae, GI6325431, Length=254, Percent_Identity=39.7637795275591, Blast_Score=181, Evalue=3e-46,
Organism=Saccharomyces cerevisiae, GI6325281, Length=272, Percent_Identity=36.0294117647059, Blast_Score=178, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6321465, Length=224, Percent_Identity=38.8392857142857, Blast_Score=167, Evalue=6e-42,
Organism=Saccharomyces cerevisiae, GI6325183, Length=310, Percent_Identity=32.9032258064516, Blast_Score=164, Evalue=4e-41,
Organism=Saccharomyces cerevisiae, GI6320887, Length=293, Percent_Identity=33.4470989761092, Blast_Score=158, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI9755327, Length=183, Percent_Identity=30.6010928961749, Blast_Score=77, Evalue=9e-15,
Organism=Saccharomyces cerevisiae, GI6320583, Length=162, Percent_Identity=30.2469135802469, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17137560, Length=733, Percent_Identity=43.3833560709413, Blast_Score=594, Evalue=1e-170,
Organism=Drosophila melanogaster, GI161076486, Length=733, Percent_Identity=43.3833560709413, Blast_Score=594, Evalue=1e-170,
Organism=Drosophila melanogaster, GI161076488, Length=710, Percent_Identity=44.0845070422535, Blast_Score=591, Evalue=1e-169,
Organism=Drosophila melanogaster, GI19921202, Length=566, Percent_Identity=39.5759717314488, Blast_Score=398, Evalue=1e-111,
Organism=Drosophila melanogaster, GI24660075, Length=283, Percent_Identity=46.643109540636, Blast_Score=273, Evalue=2e-73,
Organism=Drosophila melanogaster, GI281365776, Length=283, Percent_Identity=46.643109540636, Blast_Score=273, Evalue=3e-73,
Organism=Drosophila melanogaster, GI45552965, Length=283, Percent_Identity=46.643109540636, Blast_Score=273, Evalue=3e-73,
Organism=Drosophila melanogaster, GI21355121, Length=474, Percent_Identity=34.1772151898734, Blast_Score=253, Evalue=3e-67,
Organism=Drosophila melanogaster, GI24656825, Length=521, Percent_Identity=33.2053742802303, Blast_Score=253, Evalue=3e-67,
Organism=Drosophila melanogaster, GI24656820, Length=540, Percent_Identity=32.037037037037, Blast_Score=246, Evalue=6e-65,
Organism=Drosophila melanogaster, GI18860063, Length=233, Percent_Identity=47.6394849785408, Blast_Score=227, Evalue=3e-59,
Organism=Drosophila melanogaster, GI24649446, Length=236, Percent_Identity=47.0338983050847, Blast_Score=224, Evalue=2e-58,
Organism=Drosophila melanogaster, GI281363136, Length=520, Percent_Identity=31.7307692307692, Blast_Score=223, Evalue=3e-58,
Organism=Drosophila melanogaster, GI78707192, Length=520, Percent_Identity=31.7307692307692, Blast_Score=223, Evalue=3e-58,
Organism=Drosophila melanogaster, GI281361487, Length=233, Percent_Identity=45.9227467811159, Blast_Score=223, Evalue=5e-58,
Organism=Drosophila melanogaster, GI24652279, Length=235, Percent_Identity=44.6808510638298, Blast_Score=221, Evalue=1e-57,
Organism=Drosophila melanogaster, GI24651451, Length=264, Percent_Identity=43.5606060606061, Blast_Score=221, Evalue=1e-57,
Organism=Drosophila melanogaster, GI19920408, Length=262, Percent_Identity=43.8931297709924, Blast_Score=220, Evalue=2e-57,
Organism=Drosophila melanogaster, GI17137738, Length=264, Percent_Identity=42.0454545454545, Blast_Score=216, Evalue=7e-56,
Organism=Drosophila melanogaster, GI17738151, Length=230, Percent_Identity=45.6521739130435, Blast_Score=213, Evalue=4e-55,
Organism=Drosophila melanogaster, GI24640100, Length=263, Percent_Identity=42.5855513307985, Blast_Score=211, Evalue=1e-54,
Organism=Drosophila melanogaster, GI24663015, Length=297, Percent_Identity=38.047138047138, Blast_Score=200, Evalue=2e-51,
Organism=Drosophila melanogaster, GI24658770, Length=223, Percent_Identity=43.9461883408072, Blast_Score=191, Evalue=1e-48,
Organism=Drosophila melanogaster, GI28574878, Length=262, Percent_Identity=41.2213740458015, Blast_Score=189, Evalue=7e-48,
Organism=Drosophila melanogaster, GI24665814, Length=262, Percent_Identity=41.2213740458015, Blast_Score=188, Evalue=1e-47,
Organism=Drosophila melanogaster, GI17864540, Length=459, Percent_Identity=31.5904139433551, Blast_Score=186, Evalue=5e-47,
Organism=Drosophila melanogaster, GI28573010, Length=404, Percent_Identity=33.4158415841584, Blast_Score=184, Evalue=1e-46,
Organism=Drosophila melanogaster, GI24639391, Length=263, Percent_Identity=38.7832699619772, Blast_Score=179, Evalue=5e-45,
Organism=Drosophila melanogaster, GI24644145, Length=281, Percent_Identity=36.2989323843416, Blast_Score=169, Evalue=5e-42,
Organism=Drosophila melanogaster, GI18859657, Length=242, Percent_Identity=38.8429752066116, Blast_Score=166, Evalue=4e-41,
Organism=Drosophila melanogaster, GI281360146, Length=242, Percent_Identity=36.3636363636364, Blast_Score=165, Evalue=1e-40,
Organism=Drosophila melanogaster, GI281360142, Length=242, Percent_Identity=36.3636363636364, Blast_Score=165, Evalue=1e-40,
Organism=Drosophila melanogaster, GI281360138, Length=242, Percent_Identity=36.3636363636364, Blast_Score=165, Evalue=1e-40,
Organism=Drosophila melanogaster, GI21357333, Length=242, Percent_Identity=36.3636363636364, Blast_Score=165, Evalue=1e-40,
Organism=Drosophila melanogaster, GI281360144, Length=242, Percent_Identity=36.3636363636364, Blast_Score=164, Evalue=2e-40,
Organism=Drosophila melanogaster, GI281360140, Length=242, Percent_Identity=36.3636363636364, Blast_Score=164, Evalue=2e-40,
Organism=Drosophila melanogaster, GI281360136, Length=242, Percent_Identity=36.3636363636364, Blast_Score=164, Evalue=2e-40,
Organism=Drosophila melanogaster, GI24644411, Length=242, Percent_Identity=36.3636363636364, Blast_Score=164, Evalue=2e-40,
Organism=Drosophila melanogaster, GI24581396, Length=288, Percent_Identity=36.4583333333333, Blast_Score=164, Evalue=2e-40,
Organism=Drosophila melanogaster, GI20129529, Length=261, Percent_Identity=35.2490421455939, Blast_Score=163, Evalue=5e-40,
Organism=Drosophila melanogaster, GI20129423, Length=232, Percent_Identity=34.4827586206897, Blast_Score=155, Evalue=1e-37,
Organism=Drosophila melanogaster, GI28571849, Length=255, Percent_Identity=37.2549019607843, Blast_Score=149, Evalue=8e-36,
Organism=Drosophila melanogaster, GI28571847, Length=255, Percent_Identity=37.2549019607843, Blast_Score=149, Evalue=8e-36,
Organism=Drosophila melanogaster, GI24639486, Length=241, Percent_Identity=34.0248962655602, Blast_Score=132, Evalue=1e-30,
Organism=Drosophila melanogaster, GI45554047, Length=166, Percent_Identity=38.5542168674699, Blast_Score=123, Evalue=4e-28,
Organism=Drosophila melanogaster, GI28573181, Length=223, Percent_Identity=29.1479820627803, Blast_Score=82, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR003593
- InterPro:   IPR005938
- InterPro:   IPR003959
- InterPro:   IPR003960
- InterPro:   IPR003338
- InterPro:   IPR004201
- InterPro:   IPR015415 [H]

Pfam domain/function: PF00004 AAA; PF02933 CDC48_2; PF02359 CDC48_N; PF09336 Vps4_C [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 80695; Mature: 80695

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS00674 AAA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTVKQLKNRDPGSGMAVIDRDALQEIGVSSGDFVAIEGRNGGRTVARVWPSNTSDAGR
CCCCHHHHCCCCCCCCEEEEEHHHHHHCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCC
GIIRIDGQLRQAANVSIDDRVEVEKTEVEPADRVTVSLPQNLQIRGDLGSHLREHLVDQA
CEEEECCHHHHHCCCCCCCCEEEECCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHHH
VRAGQTVAFPIGFGMFSGRSGRRIPLRVVDTQPSGTVVVQNTTEIEIADQSAQEVSVESG
HHCCCEEEEEECCHHCCCCCCCEEEEEEEECCCCCEEEEECCCEEEECCCCHHHCCCCCC
EPENTTAPALTYEDIGGLDDELEQVREMIELPMRHPELFGTLGIEPPKGVLLHGPPGTGK
CCCCCCCCEEEHHHCCCCHHHHHHHHHHHHCCCCCCHHHEECCCCCCCCEEEECCCCCCH
TLIAKAVANEIDAHFQTISGPEIMSKYYGESEEQLRDVFEEAEENAPAIVFIDELDSIAP
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCHHCCCC
KREDVSGDVERRVVAQLLSLMDGLEERGQLTVIGTTNRVDAVDPALRRPGRFDREIEIGV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCCCCCCEEEECC
PDHDGREKILQIHTRGMPLGDGVDLDRYAENTQGFVGADLENLVKESAMHALRRIRPDLD
CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
LDEEEIPADILDSIEVTENDFKEALRGIEPSALREVFVEVPDVTWDHVGGLDDAKERLQE
CCHHHCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHH
TVQWPLEHADAYEQVALEPAKGVLLYGPPGTGKTLLAKAVANEANSNFISIKGPELFNKY
HHHCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHH
VGESERGVREVFSKARENAPTVVFFDEIDAIASERGQGVGDSNVGERVVSQLLTELDGLE
HCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHH
ELEDIVVIATTNRPDLIDDALLRPGRLDRHVAVDEPDEAARREIFEIHTEDKPLAEDVDV
HHCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCH
DELVERTDGYVGADIEAVCREAATVAVREYVRATASAESANVDEIELSIEHFEQALEEVD
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
SNAGSETQAFEKPAEAV
CCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MRLTVKQLKNRDPGSGMAVIDRDALQEIGVSSGDFVAIEGRNGGRTVARVWPSNTSDAGR
CCCCHHHHCCCCCCCCEEEEEHHHHHHCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCC
GIIRIDGQLRQAANVSIDDRVEVEKTEVEPADRVTVSLPQNLQIRGDLGSHLREHLVDQA
CEEEECCHHHHHCCCCCCCCEEEECCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHHH
VRAGQTVAFPIGFGMFSGRSGRRIPLRVVDTQPSGTVVVQNTTEIEIADQSAQEVSVESG
HHCCCEEEEEECCHHCCCCCCCEEEEEEEECCCCCEEEEECCCEEEECCCCHHHCCCCCC
EPENTTAPALTYEDIGGLDDELEQVREMIELPMRHPELFGTLGIEPPKGVLLHGPPGTGK
CCCCCCCCEEEHHHCCCCHHHHHHHHHHHHCCCCCCHHHEECCCCCCCCEEEECCCCCCH
TLIAKAVANEIDAHFQTISGPEIMSKYYGESEEQLRDVFEEAEENAPAIVFIDELDSIAP
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCHHCCCC
KREDVSGDVERRVVAQLLSLMDGLEERGQLTVIGTTNRVDAVDPALRRPGRFDREIEIGV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCCCCCCEEEECC
PDHDGREKILQIHTRGMPLGDGVDLDRYAENTQGFVGADLENLVKESAMHALRRIRPDLD
CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
LDEEEIPADILDSIEVTENDFKEALRGIEPSALREVFVEVPDVTWDHVGGLDDAKERLQE
CCHHHCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHH
TVQWPLEHADAYEQVALEPAKGVLLYGPPGTGKTLLAKAVANEANSNFISIKGPELFNKY
HHHCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHH
VGESERGVREVFSKARENAPTVVFFDEIDAIASERGQGVGDSNVGERVVSQLLTELDGLE
HCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHH
ELEDIVVIATTNRPDLIDDALLRPGRLDRHVAVDEPDEAARREIFEIHTEDKPLAEDVDV
HHCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCH
DELVERTDGYVGADIEAVCREAATVAVREYVRATASAESANVDEIELSIEHFEQALEEVD
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
SNAGSETQAFEKPAEAV
CCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Metalloendopeptidases [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]