Click here to switch to the map view.

The map label for this gene is tbpA

Identifier: 16120010

GI number: 16120010

Start: 30131

End: 30346

Strand: Direct

Name: tbpA

Synonym: VNG6037G

Alternate gene names: 16120010

Gene position: 30131-30346 (Clockwise)

Preceding gene: 16120009

Following gene: 16120013

Centisome position: 8.25

GC content: 65.74

Gene sequence:

>216_bases
ATGGACCTCGAGGGGGCTGACTACGATCCGGAGCAGTTCCCTGGGCTCGTCTACCGCCTCGACGAGCCGTCGGTCGTCGC
GCTGCTGTTCGGCAGCGGGAAGCTCGTCATCACCGGCGGCAAGCATCCTGTGGACGCCGAACACGCGGTGGACACGATCG
ACTCTCGCCTGGAGGACCTCGGCCTGCTCGATGGGTACGGCGATCGGGCGAAATAA

Upstream 100 bases:

>100_bases
TTTTAAGTAGCTAATGGAAGATCCGAAGGACACCATCACCATCGAAAACGTGGTTGCGTCGACCGCGATCGAGCAGGAAC
TCGATCTCTCGCGGGTCGCA

Downstream 100 bases:

>100_bases
GGTAACGACCGTACAGTTCGAACCGGTCACGGGCGCGGGAAATCGCCGGGCGTGACGTACCGAGACCCTTCGACGCTTCC
CATCTCGAGAGGTCGCCTTT

Product: transcription initiation factor IID

Products: NA

Alternate protein names: Box A-binding protein 1; BAP 1; TATA sequence-binding protein 1; TBP 1; TATA-box factor 1 [H]

Number of amino acids: Translated: 71; Mature: 71

Protein sequence:

>71_residues
MDLEGADYDPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKHPVDAEHAVDTIDSRLEDLGLLDGYGDRAK

Sequences:

>Translated_71_residues
MDLEGADYDPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKHPVDAEHAVDTIDSRLEDLGLLDGYGDRAK
>Mature_71_residues
MDLEGADYDPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKHPVDAEHAVDTIDSRLEDLGLLDGYGDRAK

Specific function: General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation [H]

COG id: COG2101

COG function: function code K; TATA-box binding protein (TBP), component of TFIID and TFIIIB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TBP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012295
- InterPro:   IPR000814
- InterPro:   IPR012294 [H]

Pfam domain/function: PF00352 TBP [H]

EC number: NA

Molecular weight: Translated: 7659; Mature: 7659

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLEGADYDPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKHPVDAEHAVDTIDSRLEDL
CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHC
GLLDGYGDRAK
CCCCCCCCCCC
>Mature Secondary Structure
MDLEGADYDPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKHPVDAEHAVDTIDSRLEDL
CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHC
GLLDGYGDRAK
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA