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The map label for this gene is gvpD1

Identifier: 16120002

GI number: 16120002

Start: 20673

End: 22283

Strand: Reverse

Name: gvpD1

Synonym: VNG6028G

Alternate gene names: 16120002

Gene position: 22283-20673 (Counterclockwise)

Preceding gene: 16120008

Following gene: 16120001

Centisome position: 6.1

GC content: 56.86

Gene sequence:

>1611_bases
ATGAGTTCACCCAATCTAGCTCACCCGCCCACAGACTACACCGGAATCGTGTTATTCCCCCGCGAGCTCAGCCAGTTTTT
CATGGGTGACGCCGGGGAAACGCTCCTCATTAACGGTGCACCAGGCACGGGTAAGACCTTGTTCACGATCCGCGGCCTCG
ATGTGTTGGACCGAGACAGTGATGTCCTCTACGTGTCCACACGTGTTGATCAGGAGACGGTTCACGAGATGTACTTCGCC
GATCACTCCTCACTCGACACAACCGCGATTCTTGACCTCTTCCAAGACCCATTCGAACTCCCACTGGACGTAGACGTGCC
ATTCGAGAAACTCGATCTGGATTCGCTCCTCGAATGGATCCAAGAGATCAACGCCGCGACCACGCAACTCACAATCGCAT
TCGATAGCTGGGAACTCATCTACGAGTATTTGGCTGTTCGCCACGATGACCCCCCTGACATCAAGACTGTGACGAATCAA
CTGGCCGTTCTTGCCCGCGAAGAGAACATTCGTCTGATGTTAGTGACAGAAACAGCGGCGCCCTCATCGCTTGAATACAT
CGTCGATGGGGTCGTCACCCTCCAGGTTAAGGAGGATGACCGTGGCCGAACGCGTCGGGATCTCCGCTTGGATAAGCTTC
GGGGCGTTCGAATCGGCAACCGCTTACAGCCCTTTACGCTTGCCGACGGCCAGTTCCAGGTGATCACGCCGGTCGAATTA
CTAACCATCCAAACAGGAACCGGGAATGGCACGTGGGATCCCCTGGCAAATTCGAAGGCGAAATTCTCGACTGGCATCCG
TGATCTTGACCGTATCCTCTCGGGTGGCTACAACCGCGGCAGCGTCGTTCATCTCGACCTCGGGCCCGATCTGTCTCGTG
ACGCGTGGAGCGTGTTGACGCTCCCGACGATTCGCAACTTCCTCTCTCAGGAGATGGGGGTTGCGGTTGTCCCGCCCCGG
GAGGGCAGCCCTGGCTTACTCCACAACGATCTCAATACTGTGCTCTCCTCACAGGTCTTCGATACCTACTGCCACGTCTT
CGAAACATACGCCGGCCCCTCTGACAGTGCGGATCGGTACGACCAACCGGACAGCACTGAGTCATTTTCTGAGATGGCAA
CGACAACGCCGCCGGACGATGCACCGACGGCGACGCATGAGACTGATGGTGCGGACGATGGCTCACGTTCGACGGATGGA
GTTACGGGGAGTGACCAGCCGCATCCGATTGATGAGGACTTTGAGTCACCGATAGAGGGCGGGCAACTCGCGTACGAGCC
ATACATGGCCTACGTTGAACAGGTGCGAGAAGAAAGTGAAGATCCGTTGTTGCACGTGATCAGCATGGACACGGCGCAGG
AGGCATTTGAGACCCGGCTAGGTGACTTTGCAAATTACGTCGCTCTCCACAACGACCTGACACTGCTCATCACCAAGCAA
GGTACTGAACTCCGCACGCGAGCGGATCGGGTTGCCGATATGCACTTCCGGCTGGAACGGTCCGGTGACGCCATCATCCT
GTATGGCGAAAACCCGTTGACGCCCCTGCTCGGAATCGGCATCAGCCAGTCAGAGTCGATCCCCAAAATCACGCTCACGG
AGATGGTCTAA

Upstream 100 bases:

>100_bases
CTAAGTACGGAGAGTGTAAAGCTTCTTAGACAGTCGTGAAGCGAAGAAAGCCTCACCTACTAGTCGGGAGTGCTCTACCG
CCATCGACTGGAGAGAAGTA

Downstream 100 bases:

>100_bases
CAATGGACGACTTGCTGGAGGAACTCACCGCAGACATCGATGCTAACGCCGCGATCTCGTTCGCAGTCACAGATCTCGAA
TCAGTGATCGAATCCGACGG

Product: GvpD protein, cluster A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MSSPNLAHPPTDYTGIVLFPRELSQFFMGDAGETLLINGAPGTGKTLFTIRGLDVLDRDSDVLYVSTRVDQETVHEMYFA
DHSSLDTTAILDLFQDPFELPLDVDVPFEKLDLDSLLEWIQEINAATTQLTIAFDSWELIYEYLAVRHDDPPDIKTVTNQ
LAVLAREENIRLMLVTETAAPSSLEYIVDGVVTLQVKEDDRGRTRRDLRLDKLRGVRIGNRLQPFTLADGQFQVITPVEL
LTIQTGTGNGTWDPLANSKAKFSTGIRDLDRILSGGYNRGSVVHLDLGPDLSRDAWSVLTLPTIRNFLSQEMGVAVVPPR
EGSPGLLHNDLNTVLSSQVFDTYCHVFETYAGPSDSADRYDQPDSTESFSEMATTTPPDDAPTATHETDGADDGSRSTDG
VTGSDQPHPIDEDFESPIEGGQLAYEPYMAYVEQVREESEDPLLHVISMDTAQEAFETRLGDFANYVALHNDLTLLITKQ
GTELRTRADRVADMHFRLERSGDAIILYGENPLTPLLGIGISQSESIPKITLTEMV

Sequences:

>Translated_536_residues
MSSPNLAHPPTDYTGIVLFPRELSQFFMGDAGETLLINGAPGTGKTLFTIRGLDVLDRDSDVLYVSTRVDQETVHEMYFA
DHSSLDTTAILDLFQDPFELPLDVDVPFEKLDLDSLLEWIQEINAATTQLTIAFDSWELIYEYLAVRHDDPPDIKTVTNQ
LAVLAREENIRLMLVTETAAPSSLEYIVDGVVTLQVKEDDRGRTRRDLRLDKLRGVRIGNRLQPFTLADGQFQVITPVEL
LTIQTGTGNGTWDPLANSKAKFSTGIRDLDRILSGGYNRGSVVHLDLGPDLSRDAWSVLTLPTIRNFLSQEMGVAVVPPR
EGSPGLLHNDLNTVLSSQVFDTYCHVFETYAGPSDSADRYDQPDSTESFSEMATTTPPDDAPTATHETDGADDGSRSTDG
VTGSDQPHPIDEDFESPIEGGQLAYEPYMAYVEQVREESEDPLLHVISMDTAQEAFETRLGDFANYVALHNDLTLLITKQ
GTELRTRADRVADMHFRLERSGDAIILYGENPLTPLLGIGISQSESIPKITLTEMV
>Mature_535_residues
SSPNLAHPPTDYTGIVLFPRELSQFFMGDAGETLLINGAPGTGKTLFTIRGLDVLDRDSDVLYVSTRVDQETVHEMYFAD
HSSLDTTAILDLFQDPFELPLDVDVPFEKLDLDSLLEWIQEINAATTQLTIAFDSWELIYEYLAVRHDDPPDIKTVTNQL
AVLAREENIRLMLVTETAAPSSLEYIVDGVVTLQVKEDDRGRTRRDLRLDKLRGVRIGNRLQPFTLADGQFQVITPVELL
TIQTGTGNGTWDPLANSKAKFSTGIRDLDRILSGGYNRGSVVHLDLGPDLSRDAWSVLTLPTIRNFLSQEMGVAVVPPRE
GSPGLLHNDLNTVLSSQVFDTYCHVFETYAGPSDSADRYDQPDSTESFSEMATTTPPDDAPTATHETDGADDGSRSTDGV
TGSDQPHPIDEDFESPIEGGQLAYEPYMAYVEQVREESEDPLLHVISMDTAQEAFETRLGDFANYVALHNDLTLLITKQG
TELRTRADRVADMHFRLERSGDAIILYGENPLTPLLGIGISQSESIPKITLTEMV

Specific function: May play a role in an energy requiring process such as assembly of gas vesicles in addition to a possible structural or regulatory function

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Vacuole, gas vesicle (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GVPD1_HALSA (P13043)

Other databases:

- EMBL:   X15374
- EMBL:   M58557
- EMBL:   X55648
- EMBL:   AF016485
- EMBL:   AE004438
- PIR:   T08241
- RefSeq:   NP_045969.1
- RefSeq:   NP_395590.1
- ProteinModelPortal:   P13043
- SMR:   P13043
- GeneID:   1446784
- GeneID:   1449259
- GenomeReviews:   AE004438_GR
- GenomeReviews:   AF016485_GR
- KEGG:   hal:VNG6028G
- HOGENOM:   HBG096384
- ProtClustDB:   CLSK539585
- BioCyc:   HSP64091:GVPD-MONOMER
- BioCyc:   HSP64091:VNG6028G-MONOMER
- GO:   GO:0005773
- InterPro:   IPR009788

Pfam domain/function: PF07088 GvpD

EC number: NA

Molecular weight: Translated: 59343; Mature: 59212

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPNLAHPPTDYTGIVLFPRELSQFFMGDAGETLLINGAPGTGKTLFTIRGLDVLDRDS
CCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEECCCC
DVLYVSTRVDQETVHEMYFADHSSLDTTAILDLFQDPFELPLDVDVPFEKLDLDSLLEWI
CEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHH
QEINAATTQLTIAFDSWELIYEYLAVRHDDPPDIKTVTNQLAVLAREENIRLMLVTETAA
HHHCCCEEEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHEEEECCCEEEEEEECCCC
PSSLEYIVDGVVTLQVKEDDRGRTRRDLRLDKLRGVRIGNRLQPFTLADGQFQVITPVEL
CCHHHHEECCEEEEEEECCCCCCCHHHCCHHHHCCEECCCCCCCEEECCCCEEEECCEEE
LTIQTGTGNGTWDPLANSKAKFSTGIRDLDRILSGGYNRGSVVHLDLGPDLSRDAWSVLT
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHEEE
LPTIRNFLSQEMGVAVVPPREGSPGLLHNDLNTVLSSQVFDTYCHVFETYAGPSDSADRY
HHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DQPDSTESFSEMATTTPPDDAPTATHETDGADDGSRSTDGVTGSDQPHPIDEDFESPIEG
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
GQLAYEPYMAYVEQVREESEDPLLHVISMDTAQEAFETRLGDFANYVALHNDLTLLITKQ
CCEEHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHEEEECCEEEEEECC
GTELRTRADRVADMHFRLERSGDAIILYGENPLTPLLGIGISQSESIPKITLTEMV
CCHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCHHHCCCCCCCCCCCEEECCCCC
>Mature Secondary Structure 
SSPNLAHPPTDYTGIVLFPRELSQFFMGDAGETLLINGAPGTGKTLFTIRGLDVLDRDS
CCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEECCCC
DVLYVSTRVDQETVHEMYFADHSSLDTTAILDLFQDPFELPLDVDVPFEKLDLDSLLEWI
CEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHH
QEINAATTQLTIAFDSWELIYEYLAVRHDDPPDIKTVTNQLAVLAREENIRLMLVTETAA
HHHCCCEEEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHEEEECCCEEEEEEECCCC
PSSLEYIVDGVVTLQVKEDDRGRTRRDLRLDKLRGVRIGNRLQPFTLADGQFQVITPVEL
CCHHHHEECCEEEEEEECCCCCCCHHHCCHHHHCCEECCCCCCCEEECCCCEEEECCEEE
LTIQTGTGNGTWDPLANSKAKFSTGIRDLDRILSGGYNRGSVVHLDLGPDLSRDAWSVLT
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHEEE
LPTIRNFLSQEMGVAVVPPREGSPGLLHNDLNTVLSSQVFDTYCHVFETYAGPSDSADRY
HHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DQPDSTESFSEMATTTPPDDAPTATHETDGADDGSRSTDGVTGSDQPHPIDEDFESPIEG
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
GQLAYEPYMAYVEQVREESEDPLLHVISMDTAQEAFETRLGDFANYVALHNDLTLLITKQ
CCEEHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHEEEECCEEEEEECC
GTELRTRADRVADMHFRLERSGDAIILYGENPLTPLLGIGISQSESIPKITLTEMV
CCHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCHHHCCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2552415; 1864501; 1956294; 9847077; 11016950