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The map label for this gene is yqiR [H]

Identifier: 160903381

GI number: 160903381

Start: 2161798

End: 2163435

Strand: Direct

Name: yqiR [H]

Synonym: Pmob_1952

Alternate gene names: 160903381

Gene position: 2161798-2163435 (Clockwise)

Preceding gene: 160903380

Following gene: 160903382

Centisome position: 99.64

GC content: 34.92

Gene sequence:

>1638_bases
ATGAAAGAAATAGAACTAATGAGGTACGTTCTTGATCAGTTACAAGATGGAGTAATGGCAATAGATGAAAGGGAAAGAAT
TTTTTACATAAACGATGCCGCCTGTAGGGTTTTAGGTGTTGATAAAGAAAAAATAATTGGACAAAATGTAGTTGAAAATG
TTCCTAATACTAGATTGCACGTTGTTTTAAGAACAGGTGAAGCAGAATTCGACAAACTACAGAGTTTAGGGGATAAAGTA
ATTTTAACTTCTCGTATCCCTATAAAAAATGATAATAATGAAACTATTGCTGTTGCCGCTGTTTTTAGAGATATCACTAC
ATTACAAAAGTTAGCTGAAGAGATCACTAATTTAAGAGAAATGGAAGCTCTACTGAGTTCCATAATTGATTCCACTTCAG
ATGCAATTTCTGTCGCAGATCAAGAAGGTCGTGTGACTATGGTCAACAGAGCTTACACAAGAATCACAGGATTAACACCA
AGAGAGGTCATTGGTAAACCTGCAACTATAGATTTGGCAGAAGGTGAAAGTTTACATATTCAATGTGCAAAAGAGAAAAA
ACCTATATACAATGTAAAAAAAAGATTAGCCACGAACAAAAAAGAAGTAGTAGCAAGCGTTACCCCACTTTTTGTTAAAA
ATGAGTTTAAGGGAAGCGTCGCCGTTATTCATGACATTTCCGAAATTCAAAGATTGATAAACGAATTAGAAGCTACAAAA
AGGATGTTGAAAAAAGAAAGTGCCACACATACCTTTGATGATTTAGTCGTTAAATCTGAAATTATGAAAGATGTTGTTGC
CCAAGCAAGTAAAGTAGCCTCAGTAGACGTCAACCTTTTATTAATAGGCGAATTTGGAGTAGGGAAAGAGGTACTAGCAC
AAGCTATTCACAACGCAAGTGCGAGGAAAGAGGGACCGTATCTCAAATTAAACTTTTCTTTGATCCCAAGAGAAAGACAA
GAAGAATACCTTTTTGGGGAGAATAGTTATCTGGCACAAGCGAATGAAGGGACCCTTTTTTTGGAAAATATTGATCTCAT
GGATATAGAAATGCAAAGAAAACTTTTAGCTTTCCTTAAAGACAATGTTTTTGATACCAATTATTACGATTTTATTCCTG
ATGTTAGGTTCATTTTTGCAACTACTGAAGATTTAAAGATTCTTTCTGGTTTGGGTAAATTTTCTAAAGAGCTTTTATAC
AAAATTTCAGTAGTAAATATAGAAGTTCCACCGTTAAGAGAAAGAAAGGAAGACATTCCTGAACTTGCTCAGCAACTATT
ACATAATCTAAATAGAAAGTATGGAAGAATAGTTTATGGATTTACTGAAGATGCCTTGAAGAAATTGATGAATTATTCGT
GGCCTGGGAACATAAGAGAGTTGGAAAACGTTATTGACCGGGCTATGTTGGCAATGGACAACAGCGATTCCATAGTTACT
TCCACGCACATTCCCGATTTGATAGAAAAGGTTGAAGAAGTCACAGGAACGCTTAAGGAAATGACAGAAGATTTCGAAAA
AAAGATAATTCTGGAAATCCTTGAAGCAAGTCACGGTAATAAAACAGAAGTTGCACGTAAACTAGGGTTAACTGTGAGAA
ATCTTTATTATAAGCTAGATAGGTATGGGATCAAGTAA

Upstream 100 bases:

>100_bases
TTGTTTATGCTTATATTGTATCATCAAATATCATAGAAGAAGATAATGAAGTTTTTTCAACGTCACAATAAACATTGGTG
ACTATCCGAGGGGTGATTTC

Downstream 100 bases:

>100_bases
AGATTTAAAATGAATAGGGGGATGAACATTGAAGTTTGAATTTCGTCTAGAGCGATTGAAAGACCTAAAAAAAATTTTAG
AAGATAATGCAAGAATGGAA

Product: PAS modulated sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MKEIELMRYVLDQLQDGVMAIDERERIFYINDAACRVLGVDKEKIIGQNVVENVPNTRLHVVLRTGEAEFDKLQSLGDKV
ILTSRIPIKNDNNETIAVAAVFRDITTLQKLAEEITNLREMEALLSSIIDSTSDAISVADQEGRVTMVNRAYTRITGLTP
REVIGKPATIDLAEGESLHIQCAKEKKPIYNVKKRLATNKKEVVASVTPLFVKNEFKGSVAVIHDISEIQRLINELEATK
RMLKKESATHTFDDLVVKSEIMKDVVAQASKVASVDVNLLLIGEFGVGKEVLAQAIHNASARKEGPYLKLNFSLIPRERQ
EEYLFGENSYLAQANEGTLFLENIDLMDIEMQRKLLAFLKDNVFDTNYYDFIPDVRFIFATTEDLKILSGLGKFSKELLY
KISVVNIEVPPLRERKEDIPELAQQLLHNLNRKYGRIVYGFTEDALKKLMNYSWPGNIRELENVIDRAMLAMDNSDSIVT
STHIPDLIEKVEEVTGTLKEMTEDFEKKIILEILEASHGNKTEVARKLGLTVRNLYYKLDRYGIK

Sequences:

>Translated_545_residues
MKEIELMRYVLDQLQDGVMAIDERERIFYINDAACRVLGVDKEKIIGQNVVENVPNTRLHVVLRTGEAEFDKLQSLGDKV
ILTSRIPIKNDNNETIAVAAVFRDITTLQKLAEEITNLREMEALLSSIIDSTSDAISVADQEGRVTMVNRAYTRITGLTP
REVIGKPATIDLAEGESLHIQCAKEKKPIYNVKKRLATNKKEVVASVTPLFVKNEFKGSVAVIHDISEIQRLINELEATK
RMLKKESATHTFDDLVVKSEIMKDVVAQASKVASVDVNLLLIGEFGVGKEVLAQAIHNASARKEGPYLKLNFSLIPRERQ
EEYLFGENSYLAQANEGTLFLENIDLMDIEMQRKLLAFLKDNVFDTNYYDFIPDVRFIFATTEDLKILSGLGKFSKELLY
KISVVNIEVPPLRERKEDIPELAQQLLHNLNRKYGRIVYGFTEDALKKLMNYSWPGNIRELENVIDRAMLAMDNSDSIVT
STHIPDLIEKVEEVTGTLKEMTEDFEKKIILEILEASHGNKTEVARKLGLTVRNLYYKLDRYGIK
>Mature_545_residues
MKEIELMRYVLDQLQDGVMAIDERERIFYINDAACRVLGVDKEKIIGQNVVENVPNTRLHVVLRTGEAEFDKLQSLGDKV
ILTSRIPIKNDNNETIAVAAVFRDITTLQKLAEEITNLREMEALLSSIIDSTSDAISVADQEGRVTMVNRAYTRITGLTP
REVIGKPATIDLAEGESLHIQCAKEKKPIYNVKKRLATNKKEVVASVTPLFVKNEFKGSVAVIHDISEIQRLINELEATK
RMLKKESATHTFDDLVVKSEIMKDVVAQASKVASVDVNLLLIGEFGVGKEVLAQAIHNASARKEGPYLKLNFSLIPRERQ
EEYLFGENSYLAQANEGTLFLENIDLMDIEMQRKLLAFLKDNVFDTNYYDFIPDVRFIFATTEDLKILSGLGKFSKELLY
KISVVNIEVPPLRERKEDIPELAQQLLHNLNRKYGRIVYGFTEDALKKLMNYSWPGNIRELENVIDRAMLAMDNSDSIVT
STHIPDLIEKVEEVTGTLKEMTEDFEKKIILEILEASHGNKTEVARKLGLTVRNLYYKLDRYGIK

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=322, Percent_Identity=35.4037267080745, Blast_Score=191, Evalue=8e-50,
Organism=Escherichia coli, GI1790437, Length=303, Percent_Identity=36.3036303630363, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1789233, Length=522, Percent_Identity=27.3946360153257, Blast_Score=171, Evalue=8e-44,
Organism=Escherichia coli, GI1788905, Length=302, Percent_Identity=35.0993377483444, Blast_Score=169, Evalue=5e-43,
Organism=Escherichia coli, GI1789087, Length=342, Percent_Identity=34.2105263157895, Blast_Score=165, Evalue=7e-42,
Organism=Escherichia coli, GI87082117, Length=320, Percent_Identity=33.125, Blast_Score=165, Evalue=7e-42,
Organism=Escherichia coli, GI1787583, Length=377, Percent_Identity=29.1777188328912, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI87081858, Length=453, Percent_Identity=28.2560706401766, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1790299, Length=335, Percent_Identity=30.7462686567164, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI87082152, Length=302, Percent_Identity=33.112582781457, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI87081872, Length=320, Percent_Identity=29.6875, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI1786524, Length=348, Percent_Identity=27.8735632183908, Blast_Score=114, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 61855; Mature: 61855

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS50112 PAS ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIELMRYVLDQLQDGVMAIDERERIFYINDAACRVLGVDKEKIIGQNVVENVPNTRLH
CCHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCEEEECCCHHHHHHHHHHHHCCCCEEE
VVLRTGEAEFDKLQSLGDKVILTSRIPIKNDNNETIAVAAVFRDITTLQKLAEEITNLRE
EEEECCCHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
MEALLSSIIDSTSDAISVADQEGRVTMVNRAYTRITGLTPREVIGKPATIDLAEGESLHI
HHHHHHHHHHCCCCCEEECCCCCCEEEEEHHHHHHCCCCHHHHCCCCCEEEECCCCEEEE
QCAKEKKPIYNVKKRLATNKKEVVASVTPLFVKNEFKGSVAVIHDISEIQRLINELEATK
EECCCCCCHHHHHHHHHCCHHHHHHHHCCHHEECCCCCCEEEEHHHHHHHHHHHHHHHHH
RMLKKESATHTFDDLVVKSEIMKDVVAQASKVASVDVNLLLIGEFGVGKEVLAQAIHNAS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCHHHHHHHHHCCC
ARKEGPYLKLNFSLIPRERQEEYLFGENSYLAQANEGTLFLENIDLMDIEMQRKLLAFLK
CCCCCCEEEEEEEECCCCCCHHHCCCCCCEEEECCCCEEEEECCCEEHHHHHHHHHHHHH
DNVFDTNYYDFIPDVRFIFATTEDLKILSGLGKFSKELLYKISVVNIEVPPLRERKEDIP
HCCCCCCCHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHH
ELAQQLLHNLNRKYGRIVYGFTEDALKKLMNYSWPGNIRELENVIDRAMLAMDNSDSIVT
HHHHHHHHHHCHHHCCEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
STHIPDLIEKVEEVTGTLKEMTEDFEKKIILEILEASHGNKTEVARKLGLTVRNLYYKLD
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
RYGIK
HCCCC
>Mature Secondary Structure
MKEIELMRYVLDQLQDGVMAIDERERIFYINDAACRVLGVDKEKIIGQNVVENVPNTRLH
CCHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCEEEECCCHHHHHHHHHHHHCCCCEEE
VVLRTGEAEFDKLQSLGDKVILTSRIPIKNDNNETIAVAAVFRDITTLQKLAEEITNLRE
EEEECCCHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
MEALLSSIIDSTSDAISVADQEGRVTMVNRAYTRITGLTPREVIGKPATIDLAEGESLHI
HHHHHHHHHHCCCCCEEECCCCCCEEEEEHHHHHHCCCCHHHHCCCCCEEEECCCCEEEE
QCAKEKKPIYNVKKRLATNKKEVVASVTPLFVKNEFKGSVAVIHDISEIQRLINELEATK
EECCCCCCHHHHHHHHHCCHHHHHHHHCCHHEECCCCCCEEEEHHHHHHHHHHHHHHHHH
RMLKKESATHTFDDLVVKSEIMKDVVAQASKVASVDVNLLLIGEFGVGKEVLAQAIHNAS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCHHHHHHHHHCCC
ARKEGPYLKLNFSLIPRERQEEYLFGENSYLAQANEGTLFLENIDLMDIEMQRKLLAFLK
CCCCCCEEEEEEEECCCCCCHHHCCCCCCEEEECCCCEEEEECCCEEHHHHHHHHHHHHH
DNVFDTNYYDFIPDVRFIFATTEDLKILSGLGKFSKELLYKISVVNIEVPPLRERKEDIP
HCCCCCCCHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHH
ELAQQLLHNLNRKYGRIVYGFTEDALKKLMNYSWPGNIRELENVIDRAMLAMDNSDSIVT
HHHHHHHHHHCHHHCCEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
STHIPDLIEKVEEVTGTLKEMTEDFEKKIILEILEASHGNKTEVARKLGLTVRNLYYKLD
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
RYGIK
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]