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The map label for this gene is yfjD [C]

Identifier: 160903258

GI number: 160903258

Start: 2011878

End: 2013224

Strand: Direct

Name: yfjD [C]

Synonym: Pmob_1827

Alternate gene names: 160903258

Gene position: 2011878-2013224 (Clockwise)

Preceding gene: 160903257

Following gene: 160903259

Centisome position: 92.73

GC content: 33.41

Gene sequence:

>1347_bases
GTGGATGACCCCGGTGGTTTGTGGGGCTCATTAATATTACTGGTTGTTCTTTTATCTTTGTCTGCTTTTTTTTCAGGATC
TGAAACTGCTTTGACTACAATAGGGAGATACAGGATAAGAGAACTGATCGATGAAGAAAAAAATGAGAAAAAAAGGAAAA
AATACCAACATTTTGTTGAGAATCCGAATCATTATTTAACAACCATACTTATAATGAACAACCTTGTAAATATCTTAGCT
ACATCTACGGCGACAGCTTTTGCAGTTAGTTTAATGCCCTCTTCTCATAGTGGTGCCATTGGTTTAGTAACAGCTATAAT
GACCCTATTGATATTGATTTTTGGAGAAATAACACCCAAGGTATATGCAAGAGAAAATAGAGAGAAATACTTTAATTTTG
CCTTTTTTACAATCTATTTTTTAAATCAACTTTTAACACCTGTGGTGTGGTTGCTTGTAAACATTACAAACGTTTTTATT
AAGCTGTTTGGTGGCGAGACCATTACCAATGCTCCACCATTAATCACAGAGGACGAAATAATTTCTTACTTGGACATAGG
GCATGAAGAAGGGGTAATTGAGAAAAGTGAAAAGTACCTGATGCAAAGAAGTCTAGAGATGAAGGATACCTCTGTCAAAG
AAATTATGACTCCAAGAGTTGATATATTAGCGATTGAGGATACAAAAACCATGGAAGAGTTGATAAAGATAATAAATGAA
GAAGGGTACTCGAGGATTCCTGTTTTCAAGGAAACGTTGGACAATGTAATTGGCATAGTTTACGCAAAAGATATTTTCAA
AAAGCTCGATGAGGTAAAAGATTTTACCAAACTGCAAAAATTAAGAGTTGTAGAAATTATGCATAAACCATTCTTTGTAC
CCATAACGATGAAAATAAGAGATGTTTTTAGGCTGTTTTTGAATAATCATACACATATGGCTATAGTTGTTGATGAATAT
GGAGGAACCGCTGGATTAGTTACTTTAGAAGATATAATAGAAGAAATGACCGGAGAAATTTTTGATGAGTACGATGACTA
CAGCGATGAAACTAATATAATAAGAGTAGCAGAAAATGTTATACTAGTTGATGGCACAACACCAATTAATGACGTTGAAA
GAGAGTTGGACATAGAATTTCCAGAAACTGAGTTTGAAACCATTGGTGGATTTTTACTTGAAAGGTTCAAAAGATTTCCT
AAACCTGGAGAAATATATTATATTGAAAATATTGAATTCGAAATTGTTTCCGTAACTATCAATAAGATAGATAAAGTTAA
AATAACTGTACATCCAAAAATGCAAACAGAAAACCAAGAAGGGACTGGTAAAGAGAAAGATGAATGA

Upstream 100 bases:

>100_bases
TAAAAGAAAGAGATAGCAGTGCTTTCATGGTTATTTTGCCAAATAGTGAAGCCATAGGATATGGTTTCAAAAAAATATCT
TAACAAGGAGATGATGGAAA

Downstream 100 bases:

>100_bases
TAAAACTATTGTTGAAAAATTGTATGAAGAAGCTATGAAAGCAAGAGAAAATGCATATGCCCCTTATTCTAATTTTAAGG
TTGGAGCATGTTTGTTATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MDDPGGLWGSLILLVVLLSLSAFFSGSETALTTIGRYRIRELIDEEKNEKKRKKYQHFVENPNHYLTTILIMNNLVNILA
TSTATAFAVSLMPSSHSGAIGLVTAIMTLLILIFGEITPKVYARENREKYFNFAFFTIYFLNQLLTPVVWLLVNITNVFI
KLFGGETITNAPPLITEDEIISYLDIGHEEGVIEKSEKYLMQRSLEMKDTSVKEIMTPRVDILAIEDTKTMEELIKIINE
EGYSRIPVFKETLDNVIGIVYAKDIFKKLDEVKDFTKLQKLRVVEIMHKPFFVPITMKIRDVFRLFLNNHTHMAIVVDEY
GGTAGLVTLEDIIEEMTGEIFDEYDDYSDETNIIRVAENVILVDGTTPINDVERELDIEFPETEFETIGGFLLERFKRFP
KPGEIYYIENIEFEIVSVTINKIDKVKITVHPKMQTENQEGTGKEKDE

Sequences:

>Translated_448_residues
MDDPGGLWGSLILLVVLLSLSAFFSGSETALTTIGRYRIRELIDEEKNEKKRKKYQHFVENPNHYLTTILIMNNLVNILA
TSTATAFAVSLMPSSHSGAIGLVTAIMTLLILIFGEITPKVYARENREKYFNFAFFTIYFLNQLLTPVVWLLVNITNVFI
KLFGGETITNAPPLITEDEIISYLDIGHEEGVIEKSEKYLMQRSLEMKDTSVKEIMTPRVDILAIEDTKTMEELIKIINE
EGYSRIPVFKETLDNVIGIVYAKDIFKKLDEVKDFTKLQKLRVVEIMHKPFFVPITMKIRDVFRLFLNNHTHMAIVVDEY
GGTAGLVTLEDIIEEMTGEIFDEYDDYSDETNIIRVAENVILVDGTTPINDVERELDIEFPETEFETIGGFLLERFKRFP
KPGEIYYIENIEFEIVSVTINKIDKVKITVHPKMQTENQEGTGKEKDE
>Mature_448_residues
MDDPGGLWGSLILLVVLLSLSAFFSGSETALTTIGRYRIRELIDEEKNEKKRKKYQHFVENPNHYLTTILIMNNLVNILA
TSTATAFAVSLMPSSHSGAIGLVTAIMTLLILIFGEITPKVYARENREKYFNFAFFTIYFLNQLLTPVVWLLVNITNVFI
KLFGGETITNAPPLITEDEIISYLDIGHEEGVIEKSEKYLMQRSLEMKDTSVKEIMTPRVDILAIEDTKTMEELIKIINE
EGYSRIPVFKETLDNVIGIVYAKDIFKKLDEVKDFTKLQKLRVVEIMHKPFFVPITMKIRDVFRLFLNNHTHMAIVVDEY
GGTAGLVTLEDIIEEMTGEIFDEYDDYSDETNIIRVAENVILVDGTTPINDVERELDIEFPETEFETIGGFLLERFKRFP
KPGEIYYIENIEFEIVSVTINKIDKVKITVHPKMQTENQEGTGKEKDE

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=393, Percent_Identity=26.2086513994911, Blast_Score=147, Evalue=3e-35,
Organism=Homo sapiens, GI40068055, Length=368, Percent_Identity=27.9891304347826, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI40068053, Length=368, Percent_Identity=27.9891304347826, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI94681046, Length=380, Percent_Identity=29.4736842105263, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI40068051, Length=266, Percent_Identity=27.0676691729323, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI145693175, Length=408, Percent_Identity=27.4509803921569, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1790664, Length=442, Percent_Identity=26.0180995475113, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1786879, Length=270, Percent_Identity=25.9259259259259, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI87082033, Length=247, Percent_Identity=25.9109311740891, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788119, Length=286, Percent_Identity=23.7762237762238, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71980512, Length=359, Percent_Identity=28.9693593314763, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17550766, Length=323, Percent_Identity=23.8390092879257, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17539402, Length=362, Percent_Identity=28.1767955801105, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 51385; Mature: 51385

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDPGGLWGSLILLVVLLSLSAFFSGSETALTTIGRYRIRELIDEEKNEKKRKKYQHFVE
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NPNHYLTTILIMNNLVNILATSTATAFAVSLMPSSHSGAIGLVTAIMTLLILIFGEITPK
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCH
VYARENREKYFNFAFFTIYFLNQLLTPVVWLLVNITNVFIKLFGGETITNAPPLITEDEI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
ISYLDIGHEEGVIEKSEKYLMQRSLEMKDTSVKEIMTPRVDILAIEDTKTMEELIKIINE
HHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEECCHHHHHHHHHHHCC
EGYSRIPVFKETLDNVIGIVYAKDIFKKLDEVKDFTKLQKLRVVEIMHKPFFVPITMKIR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHH
DVFRLFLNNHTHMAIVVDEYGGTAGLVTLEDIIEEMTGEIFDEYDDYSDETNIIRVAENV
HHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCE
ILVDGTTPINDVERELDIEFPETEFETIGGFLLERFKRFPKPGEIYYIENIEFEIVSVTI
EEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEEEE
NKIDKVKITVHPKMQTENQEGTGKEKDE
CCCEEEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDDPGGLWGSLILLVVLLSLSAFFSGSETALTTIGRYRIRELIDEEKNEKKRKKYQHFVE
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NPNHYLTTILIMNNLVNILATSTATAFAVSLMPSSHSGAIGLVTAIMTLLILIFGEITPK
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCH
VYARENREKYFNFAFFTIYFLNQLLTPVVWLLVNITNVFIKLFGGETITNAPPLITEDEI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
ISYLDIGHEEGVIEKSEKYLMQRSLEMKDTSVKEIMTPRVDILAIEDTKTMEELIKIINE
HHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEECCHHHHHHHHHHHCC
EGYSRIPVFKETLDNVIGIVYAKDIFKKLDEVKDFTKLQKLRVVEIMHKPFFVPITMKIR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHH
DVFRLFLNNHTHMAIVVDEYGGTAGLVTLEDIIEEMTGEIFDEYDDYSDETNIIRVAENV
HHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCE
ILVDGTTPINDVERELDIEFPETEFETIGGFLLERFKRFPKPGEIYYIENIEFEIVSVTI
EEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEEEE
NKIDKVKITVHPKMQTENQEGTGKEKDE
CCCEEEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]