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The map label for this gene is rbfA

Identifier: 160903126

GI number: 160903126

Start: 1848350

End: 1848703

Strand: Direct

Name: rbfA

Synonym: Pmob_1691

Alternate gene names: 160903126

Gene position: 1848350-1848703 (Clockwise)

Preceding gene: 160903125

Following gene: 160903127

Centisome position: 85.2

GC content: 28.81

Gene sequence:

>354_bases
ATGGCTCAGTATAGAAGAGAAATGCTTGAGTCTGAAATGAAAAAATTAATTACCCAAGGTTTTTCTCAATTAAAGGATCC
TAGATTAAAAGACAAATTTATTGACATAAATATGGTACGTTTATCAAAAGATAAATCTTATTTAGATGTATATGTTTCAT
CTCTTGATGAAGATATTGATACCATCATTAATATTCTAAACAACGCAAAGGGTATGTTTAGAACTCTTATCGCAAAAAAT
ATTAAAATGTTCAAGGTTCCCGAGGTAAGGTTTCATAAAGACGAAGGTATTGAAGCAAGTATTAGAATAAATAAACTAAT
AGAGAAAATAGAGAAAAACGAGGAAGGGAAATGA

Upstream 100 bases:

>100_bases
AAGTATGCCAGTTATTTTGAAGAATTCAAAGATATAATTAAAAGGTCCCCTGAATTTACTAACATGAAAGAAGTGTTCGA
TGATCTGGAGGTGACATCTG

Downstream 100 bases:

>100_bases
AAAGTGGTTTTTTAGTAATCAACAAGCCAAAGGGTATTACTTCTCATGATGTAATCAATATTCTTAGAAAAAAGTTTGGC
TTACAGAAAATTGGTCATGC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MAQYRREMLESEMKKLITQGFSQLKDPRLKDKFIDINMVRLSKDKSYLDVYVSSLDEDIDTIINILNNAKGMFRTLIAKN
IKMFKVPEVRFHKDEGIEASIRINKLIEKIEKNEEGK

Sequences:

>Translated_117_residues
MAQYRREMLESEMKKLITQGFSQLKDPRLKDKFIDINMVRLSKDKSYLDVYVSSLDEDIDTIINILNNAKGMFRTLIAKN
IKMFKVPEVRFHKDEGIEASIRINKLIEKIEKNEEGK
>Mature_116_residues
AQYRREMLESEMKKLITQGFSQLKDPRLKDKFIDINMVRLSKDKSYLDVYVSSLDEDIDTIINILNNAKGMFRTLIAKNI
KMFKVPEVRFHKDEGIEASIRINKLIEKIEKNEEGK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_PETMO (A9BI93)

Other databases:

- EMBL:   CP000879
- RefSeq:   YP_001568707.1
- ProteinModelPortal:   A9BI93
- SMR:   A9BI93
- GeneID:   5757599
- GenomeReviews:   CP000879_GR
- KEGG:   pmo:Pmob_1691
- HOGENOM:   HBG751055
- OMA:   ELRFKED
- ProtClustDB:   CLSK875427
- BioCyc:   PMOB403833:PMOB_1691-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13782; Mature: 13651

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQYRREMLESEMKKLITQGFSQLKDPRLKDKFIDINMVRLSKDKSYLDVYVSSLDEDID
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHEEECCCHHHHHHHHHHHHHHHH
TIINILNNAKGMFRTLIAKNIKMFKVPEVRFHKDEGIEASIRINKLIEKIEKNEEGK
HHHHHHHCCHHHHHHHHHCCCCEEECCCCEECCCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AQYRREMLESEMKKLITQGFSQLKDPRLKDKFIDINMVRLSKDKSYLDVYVSSLDEDID
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHEEECCCHHHHHHHHHHHHHHHH
TIINILNNAKGMFRTLIAKNIKMFKVPEVRFHKDEGIEASIRINKLIEKIEKNEEGK
HHHHHHHCCHHHHHHHHHCCCCEEECCCCEECCCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA