Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 160902910

GI number: 160902910

Start: 1578559

End: 1579227

Strand: Direct

Name: radC [C]

Synonym: Pmob_1465

Alternate gene names: 160902910

Gene position: 1578559-1579227 (Clockwise)

Preceding gene: 160902909

Following gene: 160902911

Centisome position: 72.76

GC content: 33.63

Gene sequence:

>669_bases
ATGGAAGATCAACTAAAACCAAGAGAGAAACTAGAAAAATATGGGCCCCAATCTCTCACAGACCAGGAACTTATAGCCAT
CATTTTAAGACATGGAGTTAGAAATTATAACGTATTTGATGTTTCCGAACAAATATTAAAAAAGTATAAAACATTGAGTG
AATTGGTCGATATATCACTTGAAGAAATATCAAAAGAAAAAGGAGTAGGAAAAGTTGGAGCAATAAATCTAAAAGCTGCG
TTAGAAATAGGCAAAAGATATCACCTTCAAAAATTGCGTCAAAAGTATCAAAAGGTAACCTCTCCAGAAGAAGCATACCA
TGTTTGTGAGGACATGATATATCTCAGCACAGAAACTGTAAGAGCTATTTTTTTAGATTCTAAACTCCACATCATTACTA
TCAAAGATATTTCCAACGGAACGGTAAATATGTCAATTGCTCACCCGCGAGATATTTTTAGAGAAGCTATAATGTATAAT
GCAGTATCTTTTATTTTAGTACATAATCACCCATCAGGGGATCCCACACCGAGCATGCACGATAGGGACATTACCAAAAA
AATTATGGATTCTGGTGAGATCTTAGGTATCAACATGAACGATCATATAATTATTGGAAAGGATTCTTATTTCAGTTTTA
CTTTGGATAGGAGTGAAAAAATTGACTAA

Upstream 100 bases:

>100_bases
ATTGCAAAATTATACTGGCAATTGAGACATATGTTAGCAACCTCATAAAAACATTTCAAATATTCCAAAATTCCTATCAA
AAGCCGAAAAGGAGAGAGTA

Downstream 100 bases:

>100_bases
TGAAAATAATAATGCAGAAGATAAATTGCGAAATTTATACAAAATAAAAGAAGAAATCGAAAAAGAATTAGAAAAAAAAG
GCATAAGAAAACCTGACACA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MEDQLKPREKLEKYGPQSLTDQELIAIILRHGVRNYNVFDVSEQILKKYKTLSELVDISLEEISKEKGVGKVGAINLKAA
LEIGKRYHLQKLRQKYQKVTSPEEAYHVCEDMIYLSTETVRAIFLDSKLHIITIKDISNGTVNMSIAHPRDIFREAIMYN
AVSFILVHNHPSGDPTPSMHDRDITKKIMDSGEILGINMNDHIIIGKDSYFSFTLDRSEKID

Sequences:

>Translated_222_residues
MEDQLKPREKLEKYGPQSLTDQELIAIILRHGVRNYNVFDVSEQILKKYKTLSELVDISLEEISKEKGVGKVGAINLKAA
LEIGKRYHLQKLRQKYQKVTSPEEAYHVCEDMIYLSTETVRAIFLDSKLHIITIKDISNGTVNMSIAHPRDIFREAIMYN
AVSFILVHNHPSGDPTPSMHDRDITKKIMDSGEILGINMNDHIIIGKDSYFSFTLDRSEKID
>Mature_222_residues
MEDQLKPREKLEKYGPQSLTDQELIAIILRHGVRNYNVFDVSEQILKKYKTLSELVDISLEEISKEKGVGKVGAINLKAA
LEIGKRYHLQKLRQKYQKVTSPEEAYHVCEDMIYLSTETVRAIFLDSKLHIITIKDISNGTVNMSIAHPRDIFREAIMYN
AVSFILVHNHPSGDPTPSMHDRDITKKIMDSGEILGINMNDHIIIGKDSYFSFTLDRSEKID

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=211, Percent_Identity=36.9668246445498, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1788312, Length=104, Percent_Identity=35.5769230769231, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI2367100, Length=103, Percent_Identity=34.9514563106796, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788997, Length=139, Percent_Identity=30.9352517985612, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25432; Mature: 25432

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDQLKPREKLEKYGPQSLTDQELIAIILRHGVRNYNVFDVSEQILKKYKTLSELVDISL
CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
EEISKEKGVGKVGAINLKAALEIGKRYHLQKLRQKYQKVTSPEEAYHVCEDMIYLSTETV
HHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHE
RAIFLDSKLHIITIKDISNGTVNMSIAHPRDIFREAIMYNAVSFILVHNHPSGDPTPSMH
EEEEECCCEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCC
DRDITKKIMDSGEILGINMNDHIIIGKDSYFSFTLDRSEKID
CHHHHHHHHCCCCEEEECCCCCEEEECCCEEEEEECCCCCCC
>Mature Secondary Structure
MEDQLKPREKLEKYGPQSLTDQELIAIILRHGVRNYNVFDVSEQILKKYKTLSELVDISL
CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
EEISKEKGVGKVGAINLKAALEIGKRYHLQKLRQKYQKVTSPEEAYHVCEDMIYLSTETV
HHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHE
RAIFLDSKLHIITIKDISNGTVNMSIAHPRDIFREAIMYNAVSFILVHNHPSGDPTPSMH
EEEEECCCEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCC
DRDITKKIMDSGEILGINMNDHIIIGKDSYFSFTLDRSEKID
CHHHHHHHHCCCCEEEECCCCCEEEECCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA