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The map label for this gene is ygaD [C]

Identifier: 160902835

GI number: 160902835

Start: 1495848

End: 1497059

Strand: Direct

Name: ygaD [C]

Synonym: Pmob_1389

Alternate gene names: 160902835

Gene position: 1495848-1497059 (Clockwise)

Preceding gene: 160902833

Following gene: 160902836

Centisome position: 68.95

GC content: 31.77

Gene sequence:

>1212_bases
TTGAAGTCTTGTATAATTGCGACGGGTAATGAATTAACAGAAGGTATAATATTGGACAAAAACTCAAAATACCTAGCCGA
AAGGCTCAAATCTGTTGGATATGATACTTTAAAAATAACGAATGTAAAAGATGATTTATCTTTGATAAAGTTATCCATAG
AAGAATCGTTAGAGATGTGTGATATAATATTTCTAACAGGTGGTTTGGGACCAACACAGGACGATTTGACAGTTCAAGCT
GTTTCTGAAAGTTGTAATATAGATATTGTATTTAACGAAGAATTATTTGAGAAAATAAAAAAGTATTATTACAACAAAAC
CGGGAAATACTTAAGTATCCTAAAAAAACAAAGCTACGTTTTAAAAAATGCTGAGATACTACAAAATCCTGTAGGAAGTG
CACCAGGACAAAAAGTTCATTTTAACGGTCACACTATTTATTTACTGCCAGGACCTTATAATGAGATGAAAGCAATCTTT
GATACGCATATATATGATGAATTAAAAAGTAATATGAAAAACGATCATGTAGAATATTCACTTTACTTTTATGGCTTAAC
AGAAGCTGAGTTAATGCAAGAAGTTTCAGTCATCTTGAAAAATTTTGATTACTCTACAAAAATAGAAGAATACATAGGTC
CCAGTTTAAGAATTAGAATGCAAAAAAATGACGATTTTGAACCCATATTAGAAAAGATATTGTCTCAATTTAGTAGGTAT
TTTATTGGTTTTAAAAGTTTAGAAATTACTTTATTTGATGTATTAATGAAGTCTTCAAAAACACTTTCTTTTGCGGAGTC
ATGTACTGGAGGGATGCTTTCGGATACATTGGTATCCATTCCAGGTGCTTCTAATGTGTTTAAAGGTTCATTGGTGACGT
ATTCTAATGAATCAAAAGTAAGATTATTGGACGTCAAAAAAGAAACCATAGAAAAATTTGGAGCTGTTAGCGAAGAAACC
GTCAAAGAAATGGCATATGGTTTGAAGAAAATCATGGAAAGTGATATCTGTGTGTCTGTTAGTGGCATAGCAGGGCCAAG
CTTAGGAAGTGAACAAAAACCAGTTGGGACAGTTTGGTATGGTTTTCTCATTAACGAAGATTTTTTTGCCCTAAAAAATG
TTTTTACAGGGGATAGGGATGAAATTCGAAAAAGAGCCACGTATTTTGCTTTTTGGAATATTTTAGATTTGGTTCGAAAA
CGATATCTTTAG

Upstream 100 bases:

>100_bases
TAGCACCAAAATATTAAAATTAGCAAATTGTGAAAATAAGAAAAAAATTGTGGTAAAATATATTGATTTAGTTTAGGTAA
AACATATTGGAGTGACAAAA

Downstream 100 bases:

>100_bases
AAAATAGTGTAGAATAGCTTGAAATAGGAGGGGATAGAATTGTCGAATTACGATGTATATTTAAATGTTTTTTTAGAGGA
ATCTAAAGAAAATATTCAAG

Product: competence/damage-inducible protein CinA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MKSCIIATGNELTEGIILDKNSKYLAERLKSVGYDTLKITNVKDDLSLIKLSIEESLEMCDIIFLTGGLGPTQDDLTVQA
VSESCNIDIVFNEELFEKIKKYYYNKTGKYLSILKKQSYVLKNAEILQNPVGSAPGQKVHFNGHTIYLLPGPYNEMKAIF
DTHIYDELKSNMKNDHVEYSLYFYGLTEAELMQEVSVILKNFDYSTKIEEYIGPSLRIRMQKNDDFEPILEKILSQFSRY
FIGFKSLEITLFDVLMKSSKTLSFAESCTGGMLSDTLVSIPGASNVFKGSLVTYSNESKVRLLDVKKETIEKFGAVSEET
VKEMAYGLKKIMESDICVSVSGIAGPSLGSEQKPVGTVWYGFLINEDFFALKNVFTGDRDEIRKRATYFAFWNILDLVRK
RYL

Sequences:

>Translated_403_residues
MKSCIIATGNELTEGIILDKNSKYLAERLKSVGYDTLKITNVKDDLSLIKLSIEESLEMCDIIFLTGGLGPTQDDLTVQA
VSESCNIDIVFNEELFEKIKKYYYNKTGKYLSILKKQSYVLKNAEILQNPVGSAPGQKVHFNGHTIYLLPGPYNEMKAIF
DTHIYDELKSNMKNDHVEYSLYFYGLTEAELMQEVSVILKNFDYSTKIEEYIGPSLRIRMQKNDDFEPILEKILSQFSRY
FIGFKSLEITLFDVLMKSSKTLSFAESCTGGMLSDTLVSIPGASNVFKGSLVTYSNESKVRLLDVKKETIEKFGAVSEET
VKEMAYGLKKIMESDICVSVSGIAGPSLGSEQKPVGTVWYGFLINEDFFALKNVFTGDRDEIRKRATYFAFWNILDLVRK
RYL
>Mature_403_residues
MKSCIIATGNELTEGIILDKNSKYLAERLKSVGYDTLKITNVKDDLSLIKLSIEESLEMCDIIFLTGGLGPTQDDLTVQA
VSESCNIDIVFNEELFEKIKKYYYNKTGKYLSILKKQSYVLKNAEILQNPVGSAPGQKVHFNGHTIYLLPGPYNEMKAIF
DTHIYDELKSNMKNDHVEYSLYFYGLTEAELMQEVSVILKNFDYSTKIEEYIGPSLRIRMQKNDDFEPILEKILSQFSRY
FIGFKSLEITLFDVLMKSSKTLSFAESCTGGMLSDTLVSIPGASNVFKGSLVTYSNESKVRLLDVKKETIEKFGAVSEET
VKEMAYGLKKIMESDICVSVSGIAGPSLGSEQKPVGTVWYGFLINEDFFALKNVFTGDRDEIRKRATYFAFWNILDLVRK
RYL

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family

Homologues:

Organism=Escherichia coli, GI1789052, Length=140, Percent_Identity=45, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1788583, Length=282, Percent_Identity=23.758865248227, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1787818, Length=146, Percent_Identity=29.4520547945205, Blast_Score=89, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6323832, Length=232, Percent_Identity=28.8793103448276, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CINAL_PETMO (A9BHX8)

Other databases:

- EMBL:   CP000879
- RefSeq:   YP_001568416.1
- ProteinModelPortal:   A9BHX8
- SMR:   A9BHX8
- GeneID:   5758025
- GenomeReviews:   CP000879_GR
- KEGG:   pmo:Pmob_1389
- HOGENOM:   HBG449871
- OMA:   NPTVAPY
- BioCyc:   PMOB403833:PMOB_1389-MONOMER
- HAMAP:   MF_00226_B
- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453
- Gene3D:   G3DSA:3.40.980.10
- PIRSF:   PIRSF006728
- SMART:   SM00852
- TIGRFAMs:   TIGR00199
- TIGRFAMs:   TIGR00200

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth; SSF53218 MoCF_biosynth

EC number: NA

Molecular weight: Translated: 45702; Mature: 45702

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSCIIATGNELTEGIILDKNSKYLAERLKSVGYDTLKITNVKDDLSLIKLSIEESLEMC
CCCEEEECCCCCCCCEEEECCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
DIIFLTGGLGPTQDDLTVQAVSESCNIDIVFNEELFEKIKKYYYNKTGKYLSILKKQSYV
EEEEEECCCCCCCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LKNAEILQNPVGSAPGQKVHFNGHTIYLLPGPYNEMKAIFDTHIYDELKSNMKNDHVEYS
HHCHHHHHCCCCCCCCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LYFYGLTEAELMQEVSVILKNFDYSTKIEEYIGPSLRIRMQKNDDFEPILEKILSQFSRY
EEEEECCHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
FIGFKSLEITLFDVLMKSSKTLSFAESCTGGMLSDTLVSIPGASNVFKGSLVTYSNESKV
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHEECCCCCCCCCCCEEEECCCCCE
RLLDVKKETIEKFGAVSEETVKEMAYGLKKIMESDICVSVSGIAGPSLGSEQKPVGTVWY
EEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEE
GFLINEDFFALKNVFTGDRDEIRKRATYFAFWNILDLVRKRYL
EEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSCIIATGNELTEGIILDKNSKYLAERLKSVGYDTLKITNVKDDLSLIKLSIEESLEMC
CCCEEEECCCCCCCCEEEECCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
DIIFLTGGLGPTQDDLTVQAVSESCNIDIVFNEELFEKIKKYYYNKTGKYLSILKKQSYV
EEEEEECCCCCCCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LKNAEILQNPVGSAPGQKVHFNGHTIYLLPGPYNEMKAIFDTHIYDELKSNMKNDHVEYS
HHCHHHHHCCCCCCCCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LYFYGLTEAELMQEVSVILKNFDYSTKIEEYIGPSLRIRMQKNDDFEPILEKILSQFSRY
EEEEECCHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
FIGFKSLEITLFDVLMKSSKTLSFAESCTGGMLSDTLVSIPGASNVFKGSLVTYSNESKV
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHEECCCCCCCCCCCEEEECCCCCE
RLLDVKKETIEKFGAVSEETVKEMAYGLKKIMESDICVSVSGIAGPSLGSEQKPVGTVWY
EEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEE
GFLINEDFFALKNVFTGDRDEIRKRATYFAFWNILDLVRKRYL
EEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA