Click here to switch to the map view.

The map label for this gene is fliF [H]

Identifier: 160902819

GI number: 160902819

Start: 1478654

End: 1480204

Strand: Direct

Name: fliF [H]

Synonym: Pmob_1373

Alternate gene names: 160902819

Gene position: 1478654-1480204 (Clockwise)

Preceding gene: 160902818

Following gene: 160902820

Centisome position: 68.15

GC content: 36.69

Gene sequence:

>1551_bases
ATGGAAAAGTATATGCAACAAATAAGAGACTGGTGGAAAAATCTAGAAGATAGAAAAAAACGAAACTATATAGTTTTGTT
AATTACTGTCGTTGCGTTGATAGTATTCTTTTCAATATTGCTTTCAAGAAAAAATTATGAGTTTTTTATTGGAGGATTGG
ATCAAGCAAATGCGGGTAATATTGTAACAAAGTTGGAAGAAATGGGTATAGAATACAAAGTAGATGATTTTGGGAATATT
TACGTTGCGAATCAGAATGTATCAGAATTGAGAATGAAATTAGCTAGTGAAGGTTCATTGGGTTACAATCTTCAAGGTTA
TGAACTTCTTCAAAATCAAGGTTTTGGAGCCACCAGTTACGATAAGCAGGTCAACTATCAGATCGCTTTGGAAGGTGAGC
TGTCTAGGAGTATAGCTTCTATGGACTCGGTACAAAGTGCTCGTGTTCATTTGGTTATTCCTCCTAGAACTTACTATCAA
GTTGGTGAAAGTCCAAAACCTTCTGCATCTGTTTTGTTAGTGTTGAATCCTGGGGCGAGTGTTACTTCAAGCCAAATTAA
AGGGATAATTAATTTAGTTGCTGGAGCAGTTGCTGGGTTGCAACCTGAGAACATTAAAGTAGTGGACAATTTTTCGAACG
ATTTGAGCGCTCAGATTGCTTTGGGAGAAGATATTGGAAGTGCCGATACTAAATTTAAGTTAAAAGCTGAGATTGAGAGA
TATTATAAAGAAAAAGTAGAAAGCGGTTTGCAATCAGTCTTTGGTTTGGGGAATGTTGTTGTGGTTCCCGAGATAGAGTT
AAATTGGCAAAAAATAGAAGAAGAGCAAAGAATGGTCGAACCGGTTGTAGATGAAAATGGAATAATTTTAAGTCAACAGA
CTAAGACTGAACAGAGTAGTTCTTCTCCAAATTCTGGTGGTGTACCTGGTGTTGATTCCAACATCCCCCCCTATACTTAT
CAAACGCCTACGAGTACGGGAAATTATTACAGCAGCTCGGATGTGATCACCAACTACGATGTAAATGAGATTTATACAAG
AACTATTGAAGATAAAAATGGAGAAATATCTAATAAAAGCATAACAATTTTTATTGATTTCCAAAACAGCAAAGTAGGCG
ACAGTCAAGAGCTGAGGTCTCAAATTAAAACAGCTGTTGCTACAGCTATTGGCACACCTGAAGATAATATCTCTTTAGTT
GATATACAGTTCAATAGGGATTTGGAAGCGATGAGAGCAGATATTGAATATCAATTACAACTCAGAAGACAAAGAATCAC
TAATATTGTAATTGCTATAATTGTGATCGCATTCGTTATGATGCTTGTCATCCTAATTGCCAGAGCTCGTAGAGTTAGAA
AGGCCTCACAACTTGTTGAAGAAAGAAAGCGGGAGTTAGAATCAAGAGTTGAAGAGGCGATGAAAGAAAGAGGTGTTGAG
GTTGAGGAAGTTTCACCTGAACAAGAGAGATTTAGGGAGATTGCTACTTTAGCGGAAAATAATCCCGATGAGGTTGCAGA
TATCATTAAATCTTGGCTTAAAACTCGTTAA

Upstream 100 bases:

>100_bases
ACAACTTAGACCTGTTTATGGGTTACGAAATTTACCAAACTTCTATAAATCTAGGTTTTAGATTAGCCTTTTAAAAAATG
CCTCAGGAAGGGATGCCCCT

Downstream 100 bases:

>100_bases
TTGTCAAAAGGGGTTGCTTTAAATGGCTGAAAAGAGTAAAGAATTAGATGGCTTAAAAAAATCCGCTATATTATTGGTAC
TCTTAGGTCCAGAAAGGGCA

Product: flagellar M-ring protein FliF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MEKYMQQIRDWWKNLEDRKKRNYIVLLITVVALIVFFSILLSRKNYEFFIGGLDQANAGNIVTKLEEMGIEYKVDDFGNI
YVANQNVSELRMKLASEGSLGYNLQGYELLQNQGFGATSYDKQVNYQIALEGELSRSIASMDSVQSARVHLVIPPRTYYQ
VGESPKPSASVLLVLNPGASVTSSQIKGIINLVAGAVAGLQPENIKVVDNFSNDLSAQIALGEDIGSADTKFKLKAEIER
YYKEKVESGLQSVFGLGNVVVVPEIELNWQKIEEEQRMVEPVVDENGIILSQQTKTEQSSSSPNSGGVPGVDSNIPPYTY
QTPTSTGNYYSSSDVITNYDVNEIYTRTIEDKNGEISNKSITIFIDFQNSKVGDSQELRSQIKTAVATAIGTPEDNISLV
DIQFNRDLEAMRADIEYQLQLRRQRITNIVIAIIVIAFVMMLVILIARARRVRKASQLVEERKRELESRVEEAMKERGVE
VEEVSPEQERFREIATLAENNPDEVADIIKSWLKTR

Sequences:

>Translated_516_residues
MEKYMQQIRDWWKNLEDRKKRNYIVLLITVVALIVFFSILLSRKNYEFFIGGLDQANAGNIVTKLEEMGIEYKVDDFGNI
YVANQNVSELRMKLASEGSLGYNLQGYELLQNQGFGATSYDKQVNYQIALEGELSRSIASMDSVQSARVHLVIPPRTYYQ
VGESPKPSASVLLVLNPGASVTSSQIKGIINLVAGAVAGLQPENIKVVDNFSNDLSAQIALGEDIGSADTKFKLKAEIER
YYKEKVESGLQSVFGLGNVVVVPEIELNWQKIEEEQRMVEPVVDENGIILSQQTKTEQSSSSPNSGGVPGVDSNIPPYTY
QTPTSTGNYYSSSDVITNYDVNEIYTRTIEDKNGEISNKSITIFIDFQNSKVGDSQELRSQIKTAVATAIGTPEDNISLV
DIQFNRDLEAMRADIEYQLQLRRQRITNIVIAIIVIAFVMMLVILIARARRVRKASQLVEERKRELESRVEEAMKERGVE
VEEVSPEQERFREIATLAENNPDEVADIIKSWLKTR
>Mature_516_residues
MEKYMQQIRDWWKNLEDRKKRNYIVLLITVVALIVFFSILLSRKNYEFFIGGLDQANAGNIVTKLEEMGIEYKVDDFGNI
YVANQNVSELRMKLASEGSLGYNLQGYELLQNQGFGATSYDKQVNYQIALEGELSRSIASMDSVQSARVHLVIPPRTYYQ
VGESPKPSASVLLVLNPGASVTSSQIKGIINLVAGAVAGLQPENIKVVDNFSNDLSAQIALGEDIGSADTKFKLKAEIER
YYKEKVESGLQSVFGLGNVVVVPEIELNWQKIEEEQRMVEPVVDENGIILSQQTKTEQSSSSPNSGGVPGVDSNIPPYTY
QTPTSTGNYYSSSDVITNYDVNEIYTRTIEDKNGEISNKSITIFIDFQNSKVGDSQELRSQIKTAVATAIGTPEDNISLV
DIQFNRDLEAMRADIEYQLQLRRQRITNIVIAIIVIAFVMMLVILIARARRVRKASQLVEERKRELESRVEEAMKERGVE
VEEVSPEQERFREIATLAENNPDEVADIIKSWLKTR

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=551, Percent_Identity=29.038112522686, Blast_Score=177, Evalue=1e-45,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 57966; Mature: 57966

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKYMQQIRDWWKNLEDRKKRNYIVLLITVVALIVFFSILLSRKNYEFFIGGLDQANAGN
CHHHHHHHHHHHHCHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH
IVTKLEEMGIEYKVDDFGNIYVANQNVSELRMKLASEGSLGYNLQGYELLQNQGFGATSY
HHHHHHHCCCEEEECCCCCEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCC
DKQVNYQIALEGELSRSIASMDSVQSARVHLVIPPRTYYQVGESPKPSASVLLVLNPGAS
CCCEEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCCEEEEEECCCCC
VTSSQIKGIINLVAGAVAGLQPENIKVVDNFSNDLSAQIALGEDIGSADTKFKLKAEIER
CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHH
YYKEKVESGLQSVFGLGNVVVVPEIELNWQKIEEEQRMVEPVVDENGIILSQQTKTEQSS
HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
SSPNSGGVPGVDSNIPPYTYQTPTSTGNYYSSSDVITNYDVNEIYTRTIEDKNGEISNKS
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCE
ITIFIDFQNSKVGDSQELRSQIKTAVATAIGTPEDNISLVDIQFNRDLEAMRADIEYQLQ
EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
LRRQRITNIVIAIIVIAFVMMLVILIARARRVRKASQLVEERKRELESRVEEAMKERGVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VEEVSPEQERFREIATLAENNPDEVADIIKSWLKTR
HHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEKYMQQIRDWWKNLEDRKKRNYIVLLITVVALIVFFSILLSRKNYEFFIGGLDQANAGN
CHHHHHHHHHHHHCHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH
IVTKLEEMGIEYKVDDFGNIYVANQNVSELRMKLASEGSLGYNLQGYELLQNQGFGATSY
HHHHHHHCCCEEEECCCCCEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCC
DKQVNYQIALEGELSRSIASMDSVQSARVHLVIPPRTYYQVGESPKPSASVLLVLNPGAS
CCCEEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCCEEEEEECCCCC
VTSSQIKGIINLVAGAVAGLQPENIKVVDNFSNDLSAQIALGEDIGSADTKFKLKAEIER
CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHH
YYKEKVESGLQSVFGLGNVVVVPEIELNWQKIEEEQRMVEPVVDENGIILSQQTKTEQSS
HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
SSPNSGGVPGVDSNIPPYTYQTPTSTGNYYSSSDVITNYDVNEIYTRTIEDKNGEISNKS
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCE
ITIFIDFQNSKVGDSQELRSQIKTAVATAIGTPEDNISLVDIQFNRDLEAMRADIEYQLQ
EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
LRRQRITNIVIAIIVIAFVMMLVILIARARRVRKASQLVEERKRELESRVEEAMKERGVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VEEVSPEQERFREIATLAENNPDEVADIIKSWLKTR
HHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]