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The map label for this gene is rbsB [H]

Identifier: 160902109

GI number: 160902109

Start: 685562

End: 686626

Strand: Direct

Name: rbsB [H]

Synonym: Pmob_0636

Alternate gene names: 160902109

Gene position: 685562-686626 (Clockwise)

Preceding gene: 160902108

Following gene: 160902110

Centisome position: 31.6

GC content: 36.9

Gene sequence:

>1065_bases
ATGAAAAGATGGCTTGGGGTTTTTTTATCAGTTGTATTGGTGTTTTTAGCGTCTGTCGTTATAGCAGAAGATGTAAAGAT
TCCTGAAGCAATTGAAGGGAAAAAGTTAAGAATGGCCTTAGTAAAAGAGTGGGGAACAGGAACACATATGATTATGCATA
TCAATGGAACTAGAGCAGAAGCTGAAAGATATGGTATAGACCTTAGTGTGATTGATGCTAACAATAATCTTGCAAAAATG
GCAGAAGGCATAGACAATGCTGTAGTAAATAAGATGGATGCAATTTTAATTTCACATGGTAAAGCGCCTGCTTTGCATGA
TGCAGTTGTAAGGGCTTTAAAAGCTGGTATACCTGTGATTGTTTTTGATAATGACTTTGATATTCCTTATGAAATTCACC
AAGGAAAATTGGTTTCTATTGATCAGTATGACTTAATGATGGGTTTGCTTTCACAGATGTCTTTGGTTCAAGAATTAGAT
GGTAGTGGAAATGTTGTTTATAATAGAGTTGCTAATGTACCTCCAACAGAAAAAAGACATAGAATCTGGCAGGGAGCCAT
TTTACCCACATATCCAGGTATAAAGGTTGTCGCGACAATTGATCAAGGTACAAATAATCCAATGCCTAAAGCACAGGCGG
CTCTTGAAACAATTTTAACAACAAGAAATGACATTGATGCTGTCTATGCAGTTTGGGATGAATATGCTAAAGGATTTTAT
AACGCAATACTTGCCTCGGGAAAAAAGATTCCATTATATTCTGTTGATATTTCTGATCAGGATTTAGCCATGATGCAGGA
ACACCCTGAAATTTGGAGATCATCTGCTGCCGTTGACCCCACAGTTGTTGGTCAAGTCCAAATTCGCTTGGCTTTAAAAG
CAATAGCAGGTGAAAAGATTCCTAGGTATTACTCCTTAGAACCTGTACTGATTCATGTTAATGATTTACCACCAAAAGAA
GAAAAACGGGTGACAATGGCAGATTTAGCTGATTATTACGATAATTGGGGCTATACTGAAGCTTTTCTGGAAGACTGGAT
GATAGCTTTAGAAAAGAGTTTTTAA

Upstream 100 bases:

>100_bases
GAAAAACGTTGACAAAAATAAAAATATATGATAATATATGATAATATATGACAATAAATGATCAAACATTGTCATAAAAT
GATGAAAAGGAGAGAGAAAG

Downstream 100 bases:

>100_bases
GTAAGGCAAAATTAAAGTTTGTTGGTTTAAACCAACAAACTTTAATTATTATTAATATAATAATACTAAAAGTTTATTTA
ACATAAGGGGGTGATTAATG

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MKRWLGVFLSVVLVFLASVVIAEDVKIPEAIEGKKLRMALVKEWGTGTHMIMHINGTRAEAERYGIDLSVIDANNNLAKM
AEGIDNAVVNKMDAILISHGKAPALHDAVVRALKAGIPVIVFDNDFDIPYEIHQGKLVSIDQYDLMMGLLSQMSLVQELD
GSGNVVYNRVANVPPTEKRHRIWQGAILPTYPGIKVVATIDQGTNNPMPKAQAALETILTTRNDIDAVYAVWDEYAKGFY
NAILASGKKIPLYSVDISDQDLAMMQEHPEIWRSSAAVDPTVVGQVQIRLALKAIAGEKIPRYYSLEPVLIHVNDLPPKE
EKRVTMADLADYYDNWGYTEAFLEDWMIALEKSF

Sequences:

>Translated_354_residues
MKRWLGVFLSVVLVFLASVVIAEDVKIPEAIEGKKLRMALVKEWGTGTHMIMHINGTRAEAERYGIDLSVIDANNNLAKM
AEGIDNAVVNKMDAILISHGKAPALHDAVVRALKAGIPVIVFDNDFDIPYEIHQGKLVSIDQYDLMMGLLSQMSLVQELD
GSGNVVYNRVANVPPTEKRHRIWQGAILPTYPGIKVVATIDQGTNNPMPKAQAALETILTTRNDIDAVYAVWDEYAKGFY
NAILASGKKIPLYSVDISDQDLAMMQEHPEIWRSSAAVDPTVVGQVQIRLALKAIAGEKIPRYYSLEPVLIHVNDLPPKE
EKRVTMADLADYYDNWGYTEAFLEDWMIALEKSF
>Mature_354_residues
MKRWLGVFLSVVLVFLASVVIAEDVKIPEAIEGKKLRMALVKEWGTGTHMIMHINGTRAEAERYGIDLSVIDANNNLAKM
AEGIDNAVVNKMDAILISHGKAPALHDAVVRALKAGIPVIVFDNDFDIPYEIHQGKLVSIDQYDLMMGLLSQMSLVQELD
GSGNVVYNRVANVPPTEKRHRIWQGAILPTYPGIKVVATIDQGTNNPMPKAQAALETILTTRNDIDAVYAVWDEYAKGFY
NAILASGKKIPLYSVDISDQDLAMMQEHPEIWRSSAAVDPTVVGQVQIRLALKAIAGEKIPRYYSLEPVLIHVNDLPPKE
EKRVTMADLADYYDNWGYTEAFLEDWMIALEKSF

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39390; Mature: 39390

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRWLGVFLSVVLVFLASVVIAEDVKIPEAIEGKKLRMALVKEWGTGTHMIMHINGTRAE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHH
AERYGIDLSVIDANNNLAKMAEGIDNAVVNKMDAILISHGKAPALHDAVVRALKAGIPVI
HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCCEE
VFDNDFDIPYEIHQGKLVSIDQYDLMMGLLSQMSLVQELDGSGNVVYNRVANVPPTEKRH
EECCCCCCCEEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
RIWQGAILPTYPGIKVVATIDQGTNNPMPKAQAALETILTTRNDIDAVYAVWDEYAKGFY
HHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
NAILASGKKIPLYSVDISDQDLAMMQEHPEIWRSSAAVDPTVVGQVQIRLALKAIAGEKI
HHHHHCCCCCEEEEECCCCCHHHHHHHCHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCC
PRYYSLEPVLIHVNDLPPKEEKRVTMADLADYYDNWGYTEAFLEDWMIALEKSF
CCEECCCEEEEEECCCCCCHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRWLGVFLSVVLVFLASVVIAEDVKIPEAIEGKKLRMALVKEWGTGTHMIMHINGTRAE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHH
AERYGIDLSVIDANNNLAKMAEGIDNAVVNKMDAILISHGKAPALHDAVVRALKAGIPVI
HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCCEE
VFDNDFDIPYEIHQGKLVSIDQYDLMMGLLSQMSLVQELDGSGNVVYNRVANVPPTEKRH
EECCCCCCCEEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
RIWQGAILPTYPGIKVVATIDQGTNNPMPKAQAALETILTTRNDIDAVYAVWDEYAKGFY
HHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
NAILASGKKIPLYSVDISDQDLAMMQEHPEIWRSSAAVDPTVVGQVQIRLALKAIAGEKI
HHHHHCCCCCEEEEECCCCCHHHHHHHCHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCC
PRYYSLEPVLIHVNDLPPKEEKRVTMADLADYYDNWGYTEAFLEDWMIALEKSF
CCEECCCEEEEEECCCCCCHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]