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The map label for this gene is jag [H]

Identifier: 160902083

GI number: 160902083

Start: 659032

End: 659685

Strand: Direct

Name: jag [H]

Synonym: Pmob_0607

Alternate gene names: 160902083

Gene position: 659032-659685 (Clockwise)

Preceding gene: 160902082

Following gene: 160902084

Centisome position: 30.38

GC content: 31.5

Gene sequence:

>654_bases
GTGCTTAAATTACAAGGTGAGACAAAATTTGAAGGAACTGATTTGGAATCGGTTTTAGAAAAAGCAAAATCAAATTTTAA
CGCATCATGTATCGATGAGATTTCTTATAAGATTATTCAAGAGCCTTCTAAGGGATTCCTTTTTGGAATAGGTAAAAAGC
CCCTCATCATAGAAGCTTATCCCAACGAGAAATACCTTATCAATAAGGTAAAAAAATTCTTGAAAAATATCCTTTCGTAT
TTTGAAGAAGATGTTGATATCAATATTAATTATTACAATAAGACCTTGAAAGTTTTTTTAGAAGGAGAAAACTTGGGTAA
AGTAATTGGCAAACAAGGGCGAAACCTTGGATCACTACAGCATTTAACCATGATTTATGTCAATAGAATGACTGACACTA
AATTTGATGTCAAATTGGATGTTGGGGATTACAGAAGAAATAGGAAAAAAAACCTAGAACTAATCGCTGACAATGCTGCT
AAAAAAGCAATATCTACTAACGAAAAGGTGGAATTAGCCCCTATGTTTCCCTTTGAAAGAAAAATAATTCACAAGTATAT
AAATTATAATTATCCCAAATTACATACCGTTTCCATGGGGTTAGAACCTTATAGAAAAGTTGTGATTTATCCCTCAAAAA
ATGGTCACAATTAA

Upstream 100 bases:

>100_bases
TATTAACTTTTGTGTACAACAGGATTTACAATGTCAAAGGTATTACGTTTAGACAACTCGTTGGTTTGGGTCCAAAGCCT
GTCAGGAGGTGAAATGATAA

Downstream 100 bases:

>100_bases
TTTAAAAATTACATTAGCACTAAACACAGTATTCAAAAAATCGTGGGAGGAAACATAATTGAAAACTGTTTACCAATATC
AAGAGCAAGTTCTTTCCATA

Product: single-stranded nucleic acid binding R3H domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLKLQGETKFEGTDLESVLEKAKSNFNASCIDEISYKIIQEPSKGFLFGIGKKPLIIEAYPNEKYLINKVKKFLKNILSY
FEEDVDININYYNKTLKVFLEGENLGKVIGKQGRNLGSLQHLTMIYVNRMTDTKFDVKLDVGDYRRNRKKNLELIADNAA
KKAISTNEKVELAPMFPFERKIIHKYINYNYPKLHTVSMGLEPYRKVVIYPSKNGHN

Sequences:

>Translated_217_residues
MLKLQGETKFEGTDLESVLEKAKSNFNASCIDEISYKIIQEPSKGFLFGIGKKPLIIEAYPNEKYLINKVKKFLKNILSY
FEEDVDININYYNKTLKVFLEGENLGKVIGKQGRNLGSLQHLTMIYVNRMTDTKFDVKLDVGDYRRNRKKNLELIADNAA
KKAISTNEKVELAPMFPFERKIIHKYINYNYPKLHTVSMGLEPYRKVVIYPSKNGHN
>Mature_217_residues
MLKLQGETKFEGTDLESVLEKAKSNFNASCIDEISYKIIQEPSKGFLFGIGKKPLIIEAYPNEKYLINKVKKFLKNILSY
FEEDVDININYYNKTLKVFLEGENLGKVIGKQGRNLGSLQHLTMIYVNRMTDTKFDVKLDVGDYRRNRKKNLELIADNAA
KKAISTNEKVELAPMFPFERKIIHKYINYNYPKLHTVSMGLEPYRKVVIYPSKNGHN

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 25124; Mature: 25124

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLQGETKFEGTDLESVLEKAKSNFNASCIDEISYKIIQEPSKGFLFGIGKKPLIIEAY
CEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEC
PNEKYLINKVKKFLKNILSYFEEDVDININYYNKTLKVFLEGENLGKVIGKQGRNLGSLQ
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECEEEEEEEECCCHHHHHHHCCCCCCHHH
HLTMIYVNRMTDTKFDVKLDVGDYRRNRKKNLELIADNAAKKAISTNEKVELAPMFPFER
HHHEEEEECCCCCEEEEEEECCHHHCCCCCCCEEEECCHHHHHCCCCCCEEEEECCCHHH
KIIHKYINYNYPKLHTVSMGLEPYRKVVIYPSKNGHN
HHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MLKLQGETKFEGTDLESVLEKAKSNFNASCIDEISYKIIQEPSKGFLFGIGKKPLIIEAY
CEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEC
PNEKYLINKVKKFLKNILSYFEEDVDININYYNKTLKVFLEGENLGKVIGKQGRNLGSLQ
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECEEEEEEEECCCHHHHHHHCCCCCCHHH
HLTMIYVNRMTDTKFDVKLDVGDYRRNRKKNLELIADNAAKKAISTNEKVELAPMFPFER
HHHEEEEECCCCCEEEEEEECCHHHCCCCCCCEEEECCHHHHHCCCCCCEEEEECCCHHH
KIIHKYINYNYPKLHTVSMGLEPYRKVVIYPSKNGHN
HHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]