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The map label for this gene is rnpA

Identifier: 160902080

GI number: 160902080

Start: 657011

End: 657367

Strand: Direct

Name: rnpA

Synonym: Pmob_0604

Alternate gene names: 160902080

Gene position: 657011-657367 (Clockwise)

Preceding gene: 160902079

Following gene: 160902081

Centisome position: 30.28

GC content: 28.29

Gene sequence:

>357_bases
ATGGAAGGGCAAACTTTCAAGAAAAAAGAACGCTTACGATTAAAAAGGAATTTCAAAAATGTTTTTGAAAAGGGCGGGCG
TTTAATCGATAATAATTTTGTTATAATATATGTTCCGAATACTATGGATTATAACAGGATCGCTGTAATTGTGAACAGAA
AATTTGGCAACGCAGTTGTTAGAAATTTAATTAAAAGATACATCAGAGAAATATATAGAACAAACAAAACTTTTTTTCCT
TTAGGATATGATTTCGTATTCATTCCAAGAAAAGAGTTATCGAAAAATTTTAAAGGAATAGATTATTCTCAAATTAAAAA
CCAAATTTTAAAATTGGTGAGGAAGCTAGAAGCATGA

Upstream 100 bases:

>100_bases
GAAAAAGAACTCATGGCTTTTTAGCTAGAAAAAGAACATCAACTGGAAGAAATGTTTTAAGAAGAAGAAGAGCAAAAGGC
AGAGAACGTTTAACAGTATA

Downstream 100 bases:

>100_bases
AAAAGCTTGTTCTCAAGTCTATTGATTTTTATAGAAAACATATATCGCCTGCAACTCCTCCCAAATGTATCTACCTACCG
ACCTGCTCATCTTACACCTA

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MEGQTFKKKERLRLKRNFKNVFEKGGRLIDNNFVIIYVPNTMDYNRIAVIVNRKFGNAVVRNLIKRYIREIYRTNKTFFP
LGYDFVFIPRKELSKNFKGIDYSQIKNQILKLVRKLEA

Sequences:

>Translated_118_residues
MEGQTFKKKERLRLKRNFKNVFEKGGRLIDNNFVIIYVPNTMDYNRIAVIVNRKFGNAVVRNLIKRYIREIYRTNKTFFP
LGYDFVFIPRKELSKNFKGIDYSQIKNQILKLVRKLEA
>Mature_118_residues
MEGQTFKKKERLRLKRNFKNVFEKGGRLIDNNFVIIYVPNTMDYNRIAVIVNRKFGNAVVRNLIKRYIREIYRTNKTFFP
LGYDFVFIPRKELSKNFKGIDYSQIKNQILKLVRKLEA

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_PETMO (A9BJC4)

Other databases:

- EMBL:   CP000879
- RefSeq:   YP_001567661.1
- ProteinModelPortal:   A9BJC4
- SMR:   A9BJC4
- GeneID:   5756995
- GenomeReviews:   CP000879_GR
- KEGG:   pmo:Pmob_0604
- HOGENOM:   HBG728160
- OMA:   ISPRESG
- BioCyc:   PMOB403833:PMOB_0604-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14211; Mature: 14211

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGQTFKKKERLRLKRNFKNVFEKGGRLIDNNFVIIYVPNTMDYNRIAVIVNRKFGNAVV
CCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCCCCEEEEEEECCCCHHHH
RNLIKRYIREIYRTNKTFFPLGYDFVFIPRKELSKNFKGIDYSQIKNQILKLVRKLEA
HHHHHHHHHHHHHCCCCEEECCCCEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEGQTFKKKERLRLKRNFKNVFEKGGRLIDNNFVIIYVPNTMDYNRIAVIVNRKFGNAVV
CCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCCCCEEEEEEECCCCHHHH
RNLIKRYIREIYRTNKTFFPLGYDFVFIPRKELSKNFKGIDYSQIKNQILKLVRKLEA
HHHHHHHHHHHHHCCCCEEECCCCEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA