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The map label for this gene is araQ [H]

Identifier: 160902001

GI number: 160902001

Start: 571523

End: 572371

Strand: Direct

Name: araQ [H]

Synonym: Pmob_0525

Alternate gene names: 160902001

Gene position: 571523-572371 (Clockwise)

Preceding gene: 160902000

Following gene: 160902002

Centisome position: 26.34

GC content: 31.45

Gene sequence:

>849_bases
ATGAGAAAAAAAGAAAAAAAACAAATAAATAAGAAAAAAATAATAAAAATCACTTTAAATTATGTTCTTTTAATTATTTT
GGCTTTATTTTTTATATTCCCATTTTTATGGGCTCTTTCTACCTCTTTGAAGACTGCAACAGATGTTCTAACTTGGCCGC
CCAAGTGGATACCTAACCCTGCTACTCTTGATGCTTACAAATACGTTATTGAAAATGTTCCATTTCCGCGATACTTCTTA
AATTCTTTAATAATTACAGCCTTGGGAATAATTTTTAATGTTCTATTTGCATCTTTAGCAGCCTATCCCCTTGCAAGATT
GGAATTCAAAGGACGAAATCTTATATTTTTCTTGATTTTGTTACCTATGATGATCCCCATTCAAGGAGGTCTAATTGTTA
ATTTCATTACTATTTTAAATCTTAAACTTTTCAATACTTATTTAGCAGTTGTTTTGCCGAGTGCTGTTAGTATTTTTGGA
ATTTTTATAATGAGACAAAATTATCTCGCTATTCCAAGGGATCTTGAAGATGCTGCTAGAATAGATGGTTGTAATGAATT
TCAACTTTGGAGGAAAATAATGTTTCCGATGGTGAGACCTGCGGCTACAGCACTTTCTATTATTTCATTTGCAGGTTTTT
GGAATGCTTTTTTGTGGCCATTGATAGTTCTTCAAAGTCAAAATAAATTCCCTTTACAGGTAGGCCTTTCTTACTTAAAC
AATATGTTTGAACAAAATTATAGATACATAACCGCCAGTTTAATTATTGCTTCCATCCCGATTCTTGTCTTTTTCTTTTT
TACTCAAAGATATTTTATAGAAGGCTATCAAGGGGCACTAAAACAGTGA

Upstream 100 bases:

>100_bases
GGACGATCAGCGGCCGTGGGAGTAATATTTTCTGCATTCTTAATTACTCTAACATTAATACAGTTCAAATTTTTTGGTTT
AGGAGGTGTCGGTGGTGAAA

Downstream 100 bases:

>100_bases
ACTTTTAGTTCAAATCAGTGTTTCCCAAAGGAGATGAATGAAAAATGAAAAAAGGAATAATGTTTCTATTTTTTGTATTT
TGTTCAGTGATTTTTTTGGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MRKKEKKQINKKKIIKITLNYVLLIILALFFIFPFLWALSTSLKTATDVLTWPPKWIPNPATLDAYKYVIENVPFPRYFL
NSLIITALGIIFNVLFASLAAYPLARLEFKGRNLIFFLILLPMMIPIQGGLIVNFITILNLKLFNTYLAVVLPSAVSIFG
IFIMRQNYLAIPRDLEDAARIDGCNEFQLWRKIMFPMVRPAATALSIISFAGFWNAFLWPLIVLQSQNKFPLQVGLSYLN
NMFEQNYRYITASLIIASIPILVFFFFTQRYFIEGYQGALKQ

Sequences:

>Translated_282_residues
MRKKEKKQINKKKIIKITLNYVLLIILALFFIFPFLWALSTSLKTATDVLTWPPKWIPNPATLDAYKYVIENVPFPRYFL
NSLIITALGIIFNVLFASLAAYPLARLEFKGRNLIFFLILLPMMIPIQGGLIVNFITILNLKLFNTYLAVVLPSAVSIFG
IFIMRQNYLAIPRDLEDAARIDGCNEFQLWRKIMFPMVRPAATALSIISFAGFWNAFLWPLIVLQSQNKFPLQVGLSYLN
NMFEQNYRYITASLIIASIPILVFFFFTQRYFIEGYQGALKQ
>Mature_282_residues
MRKKEKKQINKKKIIKITLNYVLLIILALFFIFPFLWALSTSLKTATDVLTWPPKWIPNPATLDAYKYVIENVPFPRYFL
NSLIITALGIIFNVLFASLAAYPLARLEFKGRNLIFFLILLPMMIPIQGGLIVNFITILNLKLFNTYLAVVLPSAVSIFG
IFIMRQNYLAIPRDLEDAARIDGCNEFQLWRKIMFPMVRPAATALSIISFAGFWNAFLWPLIVLQSQNKFPLQVGLSYLN
NMFEQNYRYITASLIIASIPILVFFFFTQRYFIEGYQGALKQ

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=237, Percent_Identity=26.1603375527426, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787571, Length=280, Percent_Identity=28.2142857142857, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790464, Length=270, Percent_Identity=24.8148148148148, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32577; Mature: 32577

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKEKKQINKKKIIKITLNYVLLIILALFFIFPFLWALSTSLKTATDVLTWPPKWIPNP
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ATLDAYKYVIENVPFPRYFLNSLIITALGIIFNVLFASLAAYPLARLEFKGRNLIFFLIL
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHH
LPMMIPIQGGLIVNFITILNLKLFNTYLAVVLPSAVSIFGIFIMRQNYLAIPRDLEDAAR
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IDGCNEFQLWRKIMFPMVRPAATALSIISFAGFWNAFLWPLIVLQSQNKFPLQVGLSYLN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
NMFEQNYRYITASLIIASIPILVFFFFTQRYFIEGYQGALKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKKEKKQINKKKIIKITLNYVLLIILALFFIFPFLWALSTSLKTATDVLTWPPKWIPNP
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ATLDAYKYVIENVPFPRYFLNSLIITALGIIFNVLFASLAAYPLARLEFKGRNLIFFLIL
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHH
LPMMIPIQGGLIVNFITILNLKLFNTYLAVVLPSAVSIFGIFIMRQNYLAIPRDLEDAAR
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IDGCNEFQLWRKIMFPMVRPAATALSIISFAGFWNAFLWPLIVLQSQNKFPLQVGLSYLN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
NMFEQNYRYITASLIIASIPILVFFFFTQRYFIEGYQGALKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]