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The map label for this gene is yvrC [H]

Identifier: 160901529

GI number: 160901529

Start: 34762

End: 35640

Strand: Direct

Name: yvrC [H]

Synonym: Pmob_0038

Alternate gene names: 160901529

Gene position: 34762-35640 (Clockwise)

Preceding gene: 160901521

Following gene: 160901530

Centisome position: 1.6

GC content: 35.38

Gene sequence:

>879_bases
ATGAGGAAGGTGTTATTTACTTTTTTTACAGTTTTGTTGTCGGTTGTTTTGAGCGCTGAGTATTTATTGGTGGACGACCT
TGGAAGATTAGTTCCTTTTGAAGAGGAGGTCAACAGGGTTATTTCCGCCGCACCAGCTGTATCTGATTACATCAAATATC
TAGGTTTAGAGGACAAAGTTGTGGGCGTTACAGATTGGGATATTAACATTGATGCCGAGAAAATTGGTAATTTAGTACCT
TTAAACCTGGAGAAAATAGTTTCTTTAAGTCCTGATGTTGTATTTTTAACCGGAGGATTTCAAGAGCATGAGATTAGTAG
GTTGGAAAGGTACAATATTAAATCGTTGGTGATTAATCCAGTGAGTTTCAACGATATTTACAGGGAAATTGTATTAATTG
GCAGTATTTTGGGGGAAAGAGAAAAAGCCCAGGCTCTTTCAAATGAACTGAGGCAAAGTGTTTTAAATATTGCCAAAAAC
TCTTTCACTTGGAAAGATAAACCAACAGTTTTATATTTAATGGTTCAAAATAATGTATCTGAAATTTGGACAGCAGGAAC
CGGTTCATATATAAATGAGTTAATTGCCTACGCTGGAGGATTAAATTTAGCCGCTCCATATACTGGGAACAATGGTTTTT
TACTGGTTGGACCTGAATTCGTCGTTGCTCAAAATCCTGATATAATAATTGTTTCCTCGTATTATGAAGGCGACGAAACC
TCTAAAAATACTATCTTAAATGCCGAACAGTTTAAAAACGTAAAAGCTGTTAAAGAAGGAAAAATAGTAATGGTCGATGG
TAACAAAATGCATCAAGCTTCTCCATCATTGATCGATATACTTGAACAATTATACGAGTATTTTGGTGAAAATAGATGA

Upstream 100 bases:

>100_bases
GTCGGGAGACCTGAATAATGCTGTTTTTTCTATCTCTTCGCGCCAAAGAGATAGAAAAAATGTTTAAATGGCGCTAATTT
ATACAAGGAGGCCATTTGGT

Downstream 100 bases:

>100_bases
AACAGATCAAAAAACGAGGGGAGTTTCCCCTTGTTTTATTTCTCATAATCTCGAGCTTTTTATTAATTTTACTTTTCACA
TCCTTTGGGAGTGTCAAGGT

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MRKVLFTFFTVLLSVVLSAEYLLVDDLGRLVPFEEEVNRVISAAPAVSDYIKYLGLEDKVVGVTDWDINIDAEKIGNLVP
LNLEKIVSLSPDVVFLTGGFQEHEISRLERYNIKSLVINPVSFNDIYREIVLIGSILGEREKAQALSNELRQSVLNIAKN
SFTWKDKPTVLYLMVQNNVSEIWTAGTGSYINELIAYAGGLNLAAPYTGNNGFLLVGPEFVVAQNPDIIIVSSYYEGDET
SKNTILNAEQFKNVKAVKEGKIVMVDGNKMHQASPSLIDILEQLYEYFGENR

Sequences:

>Translated_292_residues
MRKVLFTFFTVLLSVVLSAEYLLVDDLGRLVPFEEEVNRVISAAPAVSDYIKYLGLEDKVVGVTDWDINIDAEKIGNLVP
LNLEKIVSLSPDVVFLTGGFQEHEISRLERYNIKSLVINPVSFNDIYREIVLIGSILGEREKAQALSNELRQSVLNIAKN
SFTWKDKPTVLYLMVQNNVSEIWTAGTGSYINELIAYAGGLNLAAPYTGNNGFLLVGPEFVVAQNPDIIIVSSYYEGDET
SKNTILNAEQFKNVKAVKEGKIVMVDGNKMHQASPSLIDILEQLYEYFGENR
>Mature_292_residues
MRKVLFTFFTVLLSVVLSAEYLLVDDLGRLVPFEEEVNRVISAAPAVSDYIKYLGLEDKVVGVTDWDINIDAEKIGNLVP
LNLEKIVSLSPDVVFLTGGFQEHEISRLERYNIKSLVINPVSFNDIYREIVLIGSILGEREKAQALSNELRQSVLNIAKN
SFTWKDKPTVLYLMVQNNVSEIWTAGTGSYINELIAYAGGLNLAAPYTGNNGFLLVGPEFVVAQNPDIIIVSSYYEGDET
SKNTILNAEQFKNVKAVKEGKIVMVDGNKMHQASPSLIDILEQLYEYFGENR

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 32606; Mature: 32606

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVLFTFFTVLLSVVLSAEYLLVDDLGRLVPFEEEVNRVISAAPAVSDYIKYLGLEDKV
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCE
VGVTDWDINIDAEKIGNLVPLNLEKIVSLSPDVVFLTGGFQEHEISRLERYNIKSLVINP
EEEECCCEEECHHHHCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECC
VSFNDIYREIVLIGSILGEREKAQALSNELRQSVLNIAKNSFTWKDKPTVLYLMVQNNVS
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHH
EIWTAGTGSYINELIAYAGGLNLAAPYTGNNGFLLVGPEFVVAQNPDIIIVSSYYEGDET
HHHCCCCHHHHHHHHHHHCCCCEECEEECCCCEEEECCEEEEECCCCEEEEECCCCCCCC
SKNTILNAEQFKNVKAVKEGKIVMVDGNKMHQASPSLIDILEQLYEYFGENR
CCCCEECHHHHCCHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRKVLFTFFTVLLSVVLSAEYLLVDDLGRLVPFEEEVNRVISAAPAVSDYIKYLGLEDKV
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCE
VGVTDWDINIDAEKIGNLVPLNLEKIVSLSPDVVFLTGGFQEHEISRLERYNIKSLVINP
EEEECCCEEECHHHHCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECC
VSFNDIYREIVLIGSILGEREKAQALSNELRQSVLNIAKNSFTWKDKPTVLYLMVQNNVS
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHH
EIWTAGTGSYINELIAYAGGLNLAAPYTGNNGFLLVGPEFVVAQNPDIIIVSSYYEGDET
HHHCCCCHHHHHHHHHHHCCCCEECEEECCCCEEEECCEEEEECCCCEEEEECCCCCCCC
SKNTILNAEQFKNVKAVKEGKIVMVDGNKMHQASPSLIDILEQLYEYFGENR
CCCCEECHHHHCCHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]