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The map label for this gene is ydaM [H]

Identifier: 160877266

GI number: 160877266

Start: 4926729

End: 4927886

Strand: Reverse

Name: ydaM [H]

Synonym: Sbal195_4163

Alternate gene names: 160877266

Gene position: 4927886-4926729 (Counterclockwise)

Preceding gene: 160877267

Following gene: 160877261

Centisome position: 92.16

GC content: 39.12

Gene sequence:

>1158_bases
ATGAACTTATCAGTCCAAAACATGATAGAACTCGATTCTCCAACGCTAATCATCGCACAAGCTATTGTTCAATGGCTGCT
TGCAATATTACTGATGGCTGAGAGGGGAATGGATAAAGGGACAAAATACTGGGTTATTGCACTGTTTATTCACGGGATTG
CTAATTTACTGCCGTTTTCTCGTCCTTATTTACCTCCCGTTGTTGCGGTTATTTTTTATAATTTTTGCGTCACTACTGCG
TTTTCATTCAGTTATCTGGCGTTTGCTCGCTTAGTGGGTCAACAAGCGCCGCTTTGGCTCGTTTTATTTCCCATATTCGT
GATGATCCTGACTATGTCTATTTATATTGATGACATAGCCATGCGAGTTATTTTTGCAAGTATTATTACGGGTACTCAAT
TGATCTTAATGGCATTTGTTTTAACGAGAGGCAACTGGTCTGGAAGTGAAAAGCTAAAGGGCTGGTTGATGTATTCTACT
GGCTTATTTGGGGTAGGCTTTATCGTAAGAGCCTTATTTTGTTATGTAAAACCAGAATTATTTATTCATTTAGTCGCCAA
AAGTTCTTTTCAGAGTGGATTAGTGATTGCTGGAATGATTTATATCATTTTCAGCACGGTTGTCATTCTGTTAGTTAGAT
TGGATAGATTAAACAAAGAGTTATCCACATTAGCTTCGCAGGATAGTTTGACGGGTTTATTTAACCGAAGGGCTTTTATG
CATAATGCGACGAGTATCATCGCCAGTGAAAACTTTCCCGTTAGTGTGCTTATGTTAGATCTTGATAATTTTAAGAAAAT
TAATGACGTACACGGACATAATGTCGGCGATACTGTGCTTAAGCTTTGTGCTGATGCTTTGCAAGATGGACTAAAGCAAT
ATGGCATTATTGGCCGTTTCGGTGGCGAAGAGTTCGCCGCCATTTTACCCAGAGCGGATAGCGAACAAGCATTAGCTGTA
TCCGAAAAACTTCGATTAGCTATTGAAACAATTAATGTAAATCCAGATATACGGTTATCAATTAGTATTGGTGTGGCGAC
GTCTAGTAGTGTTTCGAGTATTGAGCCTTTGCTTATTCGGGCCGATAAGGCTTTGTATGAGGCTAAATCTAAAGGTCGCA
ATCAGGTAATTCATGCAGATCTGTTAGCACTTAATTAG

Upstream 100 bases:

>100_bases
CATGCTTTGACATTCTCTATCCGAACCCTTGTCTTCATTGTGGAATTACTTCTTACCGTATGAGTATCGACTCTGATACT
ATTTCTATCTAAACCTAGAT

Downstream 100 bases:

>100_bases
TTTTTTATTCAATGGCTTATTTATTCTGTTATTTCATGTATTCAGCCTTTATATGACCAAGTCACTTGGGAACAAGCTAA
AAGTGGTTTGAAACATTGTT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MNLSVQNMIELDSPTLIIAQAIVQWLLAILLMAERGMDKGTKYWVIALFIHGIANLLPFSRPYLPPVVAVIFYNFCVTTA
FSFSYLAFARLVGQQAPLWLVLFPIFVMILTMSIYIDDIAMRVIFASIITGTQLILMAFVLTRGNWSGSEKLKGWLMYST
GLFGVGFIVRALFCYVKPELFIHLVAKSSFQSGLVIAGMIYIIFSTVVILLVRLDRLNKELSTLASQDSLTGLFNRRAFM
HNATSIIASENFPVSVLMLDLDNFKKINDVHGHNVGDTVLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALAV
SEKLRLAIETINVNPDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVIHADLLALN

Sequences:

>Translated_385_residues
MNLSVQNMIELDSPTLIIAQAIVQWLLAILLMAERGMDKGTKYWVIALFIHGIANLLPFSRPYLPPVVAVIFYNFCVTTA
FSFSYLAFARLVGQQAPLWLVLFPIFVMILTMSIYIDDIAMRVIFASIITGTQLILMAFVLTRGNWSGSEKLKGWLMYST
GLFGVGFIVRALFCYVKPELFIHLVAKSSFQSGLVIAGMIYIIFSTVVILLVRLDRLNKELSTLASQDSLTGLFNRRAFM
HNATSIIASENFPVSVLMLDLDNFKKINDVHGHNVGDTVLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALAV
SEKLRLAIETINVNPDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVIHADLLALN
>Mature_385_residues
MNLSVQNMIELDSPTLIIAQAIVQWLLAILLMAERGMDKGTKYWVIALFIHGIANLLPFSRPYLPPVVAVIFYNFCVTTA
FSFSYLAFARLVGQQAPLWLVLFPIFVMILTMSIYIDDIAMRVIFASIITGTQLILMAFVLTRGNWSGSEKLKGWLMYST
GLFGVGFIVRALFCYVKPELFIHLVAKSSFQSGLVIAGMIYIIFSTVVILLVRLDRLNKELSTLASQDSLTGLFNRRAFM
HNATSIIASENFPVSVLMLDLDNFKKINDVHGHNVGDTVLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALAV
SEKLRLAIETINVNPDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVIHADLLALN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=212, Percent_Identity=35.377358490566, Blast_Score=131, Evalue=9e-32,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=36.9047619047619, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87082007, Length=189, Percent_Identity=37.5661375661376, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=33.9181286549708, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693134, Length=182, Percent_Identity=37.3626373626374, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=34.9397590361446, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=31.2138728323699, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=30.5389221556886, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787541, Length=198, Percent_Identity=35.8585858585859, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787056, Length=151, Percent_Identity=33.7748344370861, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788956, Length=175, Percent_Identity=33.1428571428571, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788381, Length=168, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081974, Length=176, Percent_Identity=25, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 42558; Mature: 42558

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCCCCEEEHHHEECC
>Mature Secondary Structure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HHHHHHHHHHCCCCCEEEHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]