Click here to switch to the map view.

The map label for this gene is rdoA [H]

Identifier: 160877257

GI number: 160877257

Start: 4919516

End: 4920538

Strand: Reverse

Name: rdoA [H]

Synonym: Sbal195_4154

Alternate gene names: 160877257

Gene position: 4920538-4919516 (Counterclockwise)

Preceding gene: 160877258

Following gene: 160877256

Centisome position: 92.02

GC content: 50.15

Gene sequence:

>1023_bases
ATGAGTCAGAATATGACGCCACCGACCACGAGTTCTAGCGGCGCTGAGTTCCATTTTCAAGCCCTAACACCGGATTTGAT
CTTAGATGCGATCGAAAGTCTGGGCGTGTACCCGGAAACAGGCTTGCTCGCGCTAAACAGCTACGAGAACCGCGTGTATC
AGTTTCGCAGCGATGAAGGGCTGCGTTATGTGGTGAAGTTCTATCGTCCAGACCGTTGGAGCGACGCGCAGATCCAAGAG
GAGCATGATTATGCGCTCGCACTCGCGGCAGAAGATATCCCAATTGCTGTGCCTGTGATCATCGAAGGTCATACGTTACA
CAAGTACCAAGGCTATCGATTTACCCTGTTTCCTTCCTTGGGTGGCCGCGCCTTTGAAGTTGATAATTTAGAACAGCTGG
AATTAGTTGGCCGATTCATCGGTCGTATACATCAGTACGCGGTGCAAACTGTATTTGCTGAACGTGAACCGCTGAATCCA
CAGATTTTAGGCGCCGAGCCGCTTGCGTGGTTAAAGCAATCTAATCTAGTGCCTAATAGCCTACGCTTGCCGTTTTTTAC
CGTCGTTGAGCAAGTGTTGGCTAAGGCGAATGCGATTTGGGATCGCCAAGATTTTGCGGCTATTCGTTTGCATGGCGATT
TACATCCAGGCAATATTTTGTGGACGCCAGACGGTCCCGGATTCGTTGATTTAGACGATGCTCGCATGGGGCCGGCGATT
CAAGATTTATGGATGATGCTAACGGGTGATAGAGCGCAGCAGTTGATGCAGCTCGAGATATTACTCGAAGCCTATGAAGA
GTTTTGTGAGTTTGATACAAGGCAGTTAGCCTTAATTGAACCGCTGCGGGCGCTGCGTATGGTGCATTACAACGCGTGGA
TTGGTCGTCGCTGGGACGATCCTGCTTTCCCGATGAACTTCCCGTGGTTTGGGGATGAAAAGTATTGGGAACAGCAGATC
TTGGCATTTAAGGAGCAACTTTTTGCCCTTGGCGAGCCACCACTGAGCCTAGTGCCTTATTAG

Upstream 100 bases:

>100_bases
ACGGCAACATTTGCTGGCTCTCGACCGAACGAGAAGCCGATTTTGAGGTGCTGGAATACTTAGCCACTTTGCTACAACCT
CACCTAAGAGTGAACTGAAT

Downstream 100 bases:

>100_bases
TATTGAGCAAAATATGATGTCACAGACGTATCTTGTGACATTAGATTGAACTCTTAAGCTTGAGTTACACTCAAAAAATG
GAATATGTTAGTCTCCAGCC

Product: serine/threonine protein kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MSQNMTPPTTSSSGAEFHFQALTPDLILDAIESLGVYPETGLLALNSYENRVYQFRSDEGLRYVVKFYRPDRWSDAQIQE
EHDYALALAAEDIPIAVPVIIEGHTLHKYQGYRFTLFPSLGGRAFEVDNLEQLELVGRFIGRIHQYAVQTVFAEREPLNP
QILGAEPLAWLKQSNLVPNSLRLPFFTVVEQVLAKANAIWDRQDFAAIRLHGDLHPGNILWTPDGPGFVDLDDARMGPAI
QDLWMMLTGDRAQQLMQLEILLEAYEEFCEFDTRQLALIEPLRALRMVHYNAWIGRRWDDPAFPMNFPWFGDEKYWEQQI
LAFKEQLFALGEPPLSLVPY

Sequences:

>Translated_340_residues
MSQNMTPPTTSSSGAEFHFQALTPDLILDAIESLGVYPETGLLALNSYENRVYQFRSDEGLRYVVKFYRPDRWSDAQIQE
EHDYALALAAEDIPIAVPVIIEGHTLHKYQGYRFTLFPSLGGRAFEVDNLEQLELVGRFIGRIHQYAVQTVFAEREPLNP
QILGAEPLAWLKQSNLVPNSLRLPFFTVVEQVLAKANAIWDRQDFAAIRLHGDLHPGNILWTPDGPGFVDLDDARMGPAI
QDLWMMLTGDRAQQLMQLEILLEAYEEFCEFDTRQLALIEPLRALRMVHYNAWIGRRWDDPAFPMNFPWFGDEKYWEQQI
LAFKEQLFALGEPPLSLVPY
>Mature_339_residues
SQNMTPPTTSSSGAEFHFQALTPDLILDAIESLGVYPETGLLALNSYENRVYQFRSDEGLRYVVKFYRPDRWSDAQIQEE
HDYALALAAEDIPIAVPVIIEGHTLHKYQGYRFTLFPSLGGRAFEVDNLEQLELVGRFIGRIHQYAVQTVFAEREPLNPQ
ILGAEPLAWLKQSNLVPNSLRLPFFTVVEQVLAKANAIWDRQDFAAIRLHGDLHPGNILWTPDGPGFVDLDDARMGPAIQ
DLWMMLTGDRAQQLMQLEILLEAYEEFCEFDTRQLALIEPLRALRMVHYNAWIGRRWDDPAFPMNFPWFGDEKYWEQQIL
AFKEQLFALGEPPLSLVPY

Specific function: Probably involved in the extracytoplasmic stress response [H]

COG id: COG2334

COG function: function code R; Putative homoserine kinase type II (protein kinase fold)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdoA family [H]

Homologues:

Organism=Escherichia coli, GI1790290, Length=327, Percent_Identity=52.2935779816514, Blast_Score=361, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002575
- InterPro:   IPR011009 [H]

Pfam domain/function: PF01636 APH [H]

EC number: NA

Molecular weight: Translated: 39072; Mature: 38941

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNMTPPTTSSSGAEFHFQALTPDLILDAIESLGVYPETGLLALNSYENRVYQFRSDEG
CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCCCC
LRYVVKFYRPDRWSDAQIQEEHDYALALAAEDIPIAVPVIIEGHTLHKYQGYRFTLFPSL
CEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCEEEEECCEEEEEEECC
GGRAFEVDNLEQLELVGRFIGRIHQYAVQTVFAEREPLNPQILGAEPLAWLKQSNLVPNS
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHCCCCCCC
LRLPFFTVVEQVLAKANAIWDRQDFAAIRLHGDLHPGNILWTPDGPGFVDLDDARMGPAI
CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCEEECCCCCCCHHH
QDLWMMLTGDRAQQLMQLEILLEAYEEFCEFDTRQLALIEPLRALRMVHYNAWIGRRWDD
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PAFPMNFPWFGDEKYWEQQILAFKEQLFALGEPPLSLVPY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SQNMTPPTTSSSGAEFHFQALTPDLILDAIESLGVYPETGLLALNSYENRVYQFRSDEG
CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCCCC
LRYVVKFYRPDRWSDAQIQEEHDYALALAAEDIPIAVPVIIEGHTLHKYQGYRFTLFPSL
CEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCEEEEECCEEEEEEECC
GGRAFEVDNLEQLELVGRFIGRIHQYAVQTVFAEREPLNPQILGAEPLAWLKQSNLVPNS
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHCCCCCCC
LRLPFFTVVEQVLAKANAIWDRQDFAAIRLHGDLHPGNILWTPDGPGFVDLDDARMGPAI
CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCEEECCCCCCCHHH
QDLWMMLTGDRAQQLMQLEILLEAYEEFCEFDTRQLALIEPLRALRMVHYNAWIGRRWDD
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PAFPMNFPWFGDEKYWEQQILAFKEQLFALGEPPLSLVPY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]