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The map label for this gene is yoaB [C]

Identifier: 160877252

GI number: 160877252

Start: 4915733

End: 4916095

Strand: Reverse

Name: yoaB [C]

Synonym: Sbal195_4149

Alternate gene names: 160877252

Gene position: 4916095-4915733 (Counterclockwise)

Preceding gene: 160877253

Following gene: 160877249

Centisome position: 91.94

GC content: 49.86

Gene sequence:

>363_bases
ATGATCAATATGAGCATTACCCGTTTAGACGTTGGCACCCGCATGAGCAGCATAGTCATTCACCAAGGTACTGTGTATCT
GTGTGGTCAAGTGGCGAAGGATAAGTATCAAGATATCACTAAACAAACCGTCACTATGCTTGAAGAAGTCGATACCTTGT
TGGCGGAGGCGGGGAGTTCGCGTGAGCGTGTATTGTCAGCGACTATCTATCTGAAAGACATGGGTGATTACGATGCGATG
AATGCCGTATGGGATGCTTGGGTGCCTAAAGGCCATGCGCCAGCCCGCGCTTGCGTGCAAGCTGCCATTGCTGAACCGGA
ATATTTGGTTGAAGTGTCTGTGATAGCGGCGGTCGCGGTTTAA

Upstream 100 bases:

>100_bases
CTTGGCCTAAGTTAGTACCGCAGACATAAAGGCTGTTTATCGTTAAAATGGCCTATTCGGTTTGAGTTAAACCAATTATT
TAAATGTACTGATTTAAGAG

Downstream 100 bases:

>100_bases
GCGCGGAGCTATTTTTCGTCCAGTTTAGAATCCTGTCACCGAGTGTCATGACTCGGTGAAGCTTTTCTGCAATACACCTC
GCTAACTAAACCTGCATTGT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MINMSITRLDVGTRMSSIVIHQGTVYLCGQVAKDKYQDITKQTVTMLEEVDTLLAEAGSSRERVLSATIYLKDMGDYDAM
NAVWDAWVPKGHAPARACVQAAIAEPEYLVEVSVIAAVAV

Sequences:

>Translated_120_residues
MINMSITRLDVGTRMSSIVIHQGTVYLCGQVAKDKYQDITKQTVTMLEEVDTLLAEAGSSRERVLSATIYLKDMGDYDAM
NAVWDAWVPKGHAPARACVQAAIAEPEYLVEVSVIAAVAV
>Mature_120_residues
MINMSITRLDVGTRMSSIVIHQGTVYLCGQVAKDKYQDITKQTVTMLEEVDTLLAEAGSSRERVLSATIYLKDMGDYDAM
NAVWDAWVPKGHAPARACVQAAIAEPEYLVEVSVIAAVAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=115, Percent_Identity=44.3478260869565, Blast_Score=108, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13076; Mature: 13076

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINMSITRLDVGTRMSSIVIHQGTVYLCGQVAKDKYQDITKQTVTMLEEVDTLLAEAGSS
CCCCEEEEEECCCCHHHEEEECCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RERVLSATIYLKDMGDYDAMNAVWDAWVPKGHAPARACVQAAIAEPEYLVEVSVIAAVAV
HHHHEEHEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MINMSITRLDVGTRMSSIVIHQGTVYLCGQVAKDKYQDITKQTVTMLEEVDTLLAEAGSS
CCCCEEEEEECCCCHHHEEEECCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RERVLSATIYLKDMGDYDAMNAVWDAWVPKGHAPARACVQAAIAEPEYLVEVSVIAAVAV
HHHHEEHEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA