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The map label for this gene is cph2 [H]

Identifier: 160877236

GI number: 160877236

Start: 4892473

End: 4894290

Strand: Reverse

Name: cph2 [H]

Synonym: Sbal195_4133

Alternate gene names: 160877236

Gene position: 4894290-4892473 (Counterclockwise)

Preceding gene: 160877237

Following gene: 160877235

Centisome position: 91.53

GC content: 46.81

Gene sequence:

>1818_bases
ATGAAGCATCGAAATCATTCTATTAGTCATAAGATGACGCTGACCATTATCGGGGTGAGCTCATTTTTTGCTGTGTTAAC
TATGCTGGTGCAGCTGATTTGGAACTATCAGGATAGTATCGACAATGCCACGTCGGATATCCGCGAATATTCAGAATCTA
TTCTGCCGAGCGTGGCGAAGTCGCTGTGGGACGTTGACCGCAGCCTGCTATCTGATTTGCTCTCTGGTTTAGGGATGATG
CCGTTAGTGTCGAGTGTGCATTTAGACAGTATCGACGGCGTCACTATGCAGCTGGGTAAACCGCTGTTAACCGACGACGA
GTCGCAAACCCTGTTTCATTATCCTGTGACTTATCAAGATCAGCTGATCGCAACTTTAACCGTAGGCTTAGATACTAACC
AGCTTTACTACGAGCTGTGGCGACAGTTGATTTTTATTGTGCTCGGCAATGGCTTAAAGACCCTGCTGATGATCTATTTG
ATCTTGACCTTAGTGCGACTCATGGTGACGGATAGATTGTCGGCATTGGAAGATTTTACTAATAAAATCAATCTAAAATC
GCTAAAAAAGTTATCTGTGCCCGAGACGGTGACCGCCAGTCCTGACGAGATTGCCCATGTGGCATTGTCGCTTAAGGCCA
TGTATCAAAGGATACGCAACGACCTCGCTATCAATAAACGCCATCAACGTGCGTTACAGCAACAGCAGCATTTATTGTCG
GACTTAGTGAAAGAGCGGACCAAAGAACTGGACTGGCAGTCGCAGTCGAATCAATTACTGGCAGAGATTTCGCTGCAATT
TTTGAGTATCGACACCTGCAATGTAGACAAAACCTTAACTGAGGTGTGCCACAAAATAGGTCAGTTGTTTGATGTTGAAA
GGGTGAGTATTCTCGAATTTCATCAACAGCATGCCTATTACCGCAGTTTTTGGACCAGCGAGTTACATGCTAACAAGGTC
CAAGGGATTTCGGTGGACAACATTACTCAGCTTGCTAAAAAATTCGAAACAGAATCGACTTTAGTGATTGAGGATCTTGA
GGCGTTAAAGGACTTTTCACCGCAGGAATATGAAGTGATGAAATCCGTGGGCATTTGCTCTATTGCTGCCTTTGCGATTA
AAAATGCCGGAGAGTTATTGGGATTACTCTCGCTGTCGACGGTGTCGCGGCCCTTGAATTGGAACGCCCAGAAAAAGAAT
ATGCTGACTCAGTTTGCCTCCGCATTGAACGAGTTACTGTTGCGCGAGCAGAAAGAGCGGCAGATGATAGTGCTGCAACA
AGCGCTGGTTTCTGCCAATACTCAATTGAAAGAAATGGCCGAAACCGATGAGTTAACGGGCCTAGCCAATAGACGCCCCT
TTACCGAAAGATTAGAAACTGTACTACAGGCGGATATCCCTGCGGGACTGTTTATGTTGGACGTCGATTATTTCAAATCC
TACAACGACACTTACGGTCATCTCGAAGGCGATGTAGTGCTTAAGCGTGTGGCAGATGCCTTAGCGCAGTGCGATATCCT
GCCGCACAATGCTTTGTTGGCGCGCATCGGTGGCGAAGAGTTTGCCTTAGTTGTTGAGCATGTCACGCCTGCACAGTTAA
CGGCCATTGCCACGCAGTTGTGTTATCTCGTCGAGCAACTCAATATACCCCATCAAGCATCGCCGTTGGCTGTGGTGACC
ATCAGTATTGGCAGCGTGTTTTTGCCATTAGATAAGGTCTCGGGGCTTAAGATGGCCGACGTGTTACGCCGCGCCGATGT
TTGCCTTTATCGCGCTAAGGATAAAGGTCGCAATAGAGTCGAGGTTGAAGTGATTTAA

Upstream 100 bases:

>100_bases
TTCGGCATTTTATCAAATGTTAGTTGCTCGGGATTGGCCACAGATTTTCCAGTCTCAGATTTTGAATAAGTTGCCCTTCA
AGGCGTAATAACGGGTGTAC

Downstream 100 bases:

>100_bases
TGGCTAGGGTCAAGGCCGGCTTGTGCCTATCGCAGTCTTTCGCGGTTGGGCACAAGCTGAGTTTTGCTCCATCACTAGCT
TATCTCTGTGCTTTGTGATT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 605; Mature: 605

Protein sequence:

>605_residues
MKHRNHSISHKMTLTIIGVSSFFAVLTMLVQLIWNYQDSIDNATSDIREYSESILPSVAKSLWDVDRSLLSDLLSGLGMM
PLVSSVHLDSIDGVTMQLGKPLLTDDESQTLFHYPVTYQDQLIATLTVGLDTNQLYYELWRQLIFIVLGNGLKTLLMIYL
ILTLVRLMVTDRLSALEDFTNKINLKSLKKLSVPETVTASPDEIAHVALSLKAMYQRIRNDLAINKRHQRALQQQQHLLS
DLVKERTKELDWQSQSNQLLAEISLQFLSIDTCNVDKTLTEVCHKIGQLFDVERVSILEFHQQHAYYRSFWTSELHANKV
QGISVDNITQLAKKFETESTLVIEDLEALKDFSPQEYEVMKSVGICSIAAFAIKNAGELLGLLSLSTVSRPLNWNAQKKN
MLTQFASALNELLLREQKERQMIVLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADIPAGLFMLDVDYFKS
YNDTYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYLVEQLNIPHQASPLAVVT
ISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRVEVEVI

Sequences:

>Translated_605_residues
MKHRNHSISHKMTLTIIGVSSFFAVLTMLVQLIWNYQDSIDNATSDIREYSESILPSVAKSLWDVDRSLLSDLLSGLGMM
PLVSSVHLDSIDGVTMQLGKPLLTDDESQTLFHYPVTYQDQLIATLTVGLDTNQLYYELWRQLIFIVLGNGLKTLLMIYL
ILTLVRLMVTDRLSALEDFTNKINLKSLKKLSVPETVTASPDEIAHVALSLKAMYQRIRNDLAINKRHQRALQQQQHLLS
DLVKERTKELDWQSQSNQLLAEISLQFLSIDTCNVDKTLTEVCHKIGQLFDVERVSILEFHQQHAYYRSFWTSELHANKV
QGISVDNITQLAKKFETESTLVIEDLEALKDFSPQEYEVMKSVGICSIAAFAIKNAGELLGLLSLSTVSRPLNWNAQKKN
MLTQFASALNELLLREQKERQMIVLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADIPAGLFMLDVDYFKS
YNDTYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYLVEQLNIPHQASPLAVVT
ISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRVEVEVI
>Mature_605_residues
MKHRNHSISHKMTLTIIGVSSFFAVLTMLVQLIWNYQDSIDNATSDIREYSESILPSVAKSLWDVDRSLLSDLLSGLGMM
PLVSSVHLDSIDGVTMQLGKPLLTDDESQTLFHYPVTYQDQLIATLTVGLDTNQLYYELWRQLIFIVLGNGLKTLLMIYL
ILTLVRLMVTDRLSALEDFTNKINLKSLKKLSVPETVTASPDEIAHVALSLKAMYQRIRNDLAINKRHQRALQQQQHLLS
DLVKERTKELDWQSQSNQLLAEISLQFLSIDTCNVDKTLTEVCHKIGQLFDVERVSILEFHQQHAYYRSFWTSELHANKV
QGISVDNITQLAKKFETESTLVIEDLEALKDFSPQEYEVMKSVGICSIAAFAIKNAGELLGLLSLSTVSRPLNWNAQKKN
MLTQFASALNELLLREQKERQMIVLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADIPAGLFMLDVDYFKS
YNDTYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYLVEQLNIPHQASPLAVVT
ISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRVEVEVI

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=187, Percent_Identity=36.8983957219251, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=34.1040462427746, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=36.8098159509202, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788956, Length=199, Percent_Identity=35.678391959799, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787802, Length=186, Percent_Identity=34.4086021505376, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=34.1176470588235, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786584, Length=184, Percent_Identity=36.4130434782609, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=31.9767441860465, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=30.4878048780488, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 68167; Mature: 68167

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHRNHSISHKMTLTIIGVSSFFAVLTMLVQLIWNYQDSIDNATSDIREYSESILPSVAK
CCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLWDVDRSLLSDLLSGLGMMPLVSSVHLDSIDGVTMQLGKPLLTDDESQTLFHYPVTYQD
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCC
QLIATLTVGLDTNQLYYELWRQLIFIVLGNGLKTLLMIYLILTLVRLMVTDRLSALEDFT
CEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKINLKSLKKLSVPETVTASPDEIAHVALSLKAMYQRIRNDLAINKRHQRALQQQQHLLS
HCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
DLVKERTKELDWQSQSNQLLAEISLQFLSIDTCNVDKTLTEVCHKIGQLFDVERVSILEF
HHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHH
HQQHAYYRSFWTSELHANKVQGISVDNITQLAKKFETESTLVIEDLEALKDFSPQEYEVM
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHH
KSVGICSIAAFAIKNAGELLGLLSLSTVSRPLNWNAQKKNMLTQFASALNELLLREQKER
HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QMIVLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADIPAGLFMLDVDYFKS
HHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHC
YNDTYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
CYLVEQLNIPHQASPLAVVTISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV
HHHHHHCCCCCCCCCEEEEEEECCCEEEEHHHCCCCHHHHHHHHHHHHEEECCCCCCCEE
EVEVI
EEEEC
>Mature Secondary Structure
MKHRNHSISHKMTLTIIGVSSFFAVLTMLVQLIWNYQDSIDNATSDIREYSESILPSVAK
CCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLWDVDRSLLSDLLSGLGMMPLVSSVHLDSIDGVTMQLGKPLLTDDESQTLFHYPVTYQD
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCC
QLIATLTVGLDTNQLYYELWRQLIFIVLGNGLKTLLMIYLILTLVRLMVTDRLSALEDFT
CEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKINLKSLKKLSVPETVTASPDEIAHVALSLKAMYQRIRNDLAINKRHQRALQQQQHLLS
HCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
DLVKERTKELDWQSQSNQLLAEISLQFLSIDTCNVDKTLTEVCHKIGQLFDVERVSILEF
HHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHH
HQQHAYYRSFWTSELHANKVQGISVDNITQLAKKFETESTLVIEDLEALKDFSPQEYEVM
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHH
KSVGICSIAAFAIKNAGELLGLLSLSTVSRPLNWNAQKKNMLTQFASALNELLLREQKER
HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QMIVLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADIPAGLFMLDVDYFKS
HHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHC
YNDTYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
CYLVEQLNIPHQASPLAVVTISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV
HHHHHHCCCCCCCCCEEEEEEECCCEEEEHHHCCCCHHHHHHHHHHHHEEECCCCCCCEE
EVEVI
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]