| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is ilvD [H]
Identifier: 160877230
GI number: 160877230
Start: 4882768
End: 4884642
Strand: Reverse
Name: ilvD [H]
Synonym: Sbal195_4126
Alternate gene names: 160877230
Gene position: 4884642-4882768 (Counterclockwise)
Preceding gene: 160877231
Following gene: 160877229
Centisome position: 91.35
GC content: 53.44
Gene sequence:
>1875_bases ATGCCAAAGTTACGATCAGCTACCAGTACCGAAGGCCGCAATATGGCGGGTGCCCGCGCGTTATGGCGCGCCACAGGGGT GAAAGACAATGATTTTGGTAAGCCAATTATCGCTATTTCTAACTCCTTTACTCAGTTTGTACCGGGCCACGTGCACTTAA AAGACATGGGCTCACTCGTTGCAAGCGCCATTGAAGAAGCGGGCGGTATCGCAAAAGAATTCAATACCATTGCCGTCGAT GACGGTATCGCCATGGGCCACGGCGGCATGCTTTACAGTCTGCCATCGCGTGAACTTATCGCCGACAGTGTGGAATACAT GGTTAACGCCCACTGCGCCGATGCCTTAGTGTGTATCTCCAACTGCGACAAGATCACTCCCGGTATGTTGATGGCGGCGC TGCGCCTTAATATTCCCGTGGTGTTTGTGTCTGGCGGACCGATGGAAGCGGGCAAAACTAAGCTGTCGGATAAGCTCATC AAACTTGATTTAGTCGATGCTATGGTGGCGGGCGCCGACTCGAATGTGAGCGATGAAGACAGTGCCAAAATCGAGCGTAG CGCGTGCCCAACCTGCGGTTCTTGCTCGGGCATGTTTACCGCCAACTCAATGAACTGTTTAACCGAAGCACTAGGATTAT CGCTGCCGGGTAATGGCTCTATGCTGGCAACCCACGCCGATCGCCGCGAGCTGTTTTTAGAAGCGGGCCGCCGCGTGATG GCGCTGGCGAAACGTTATTATCATCAAGATGATGAATCAGCATTACCACGTAATATCGCCAACTTTAAAGCCTTCGAAAA TGCTATGACCTTAGATATCGCCATGGGCGGTTCATCTAACACTGTATTGCATTTATTAGCCGCTGCGCAGGAAGCCGATG TTGATTTTACCATGGCGGATATCGACCGTATGTCGCGCCTTGTGCCGCACCTTTGTAAGGTTGCGCCATCGACGCCTAAA TACCATATGGAAGACGTGCACCGTGCGGGCGGCGTGATGGGGATTTTGGGCGAGCTCGACAGAGCCGGATTATTGCATAC CGATGTGTTCCATGTGGCGGCCGATAATGACGGTACGCCGGGCAGCGGGACCTTGAAATCGGTATTAGCCCAGTACGATG TGATGCAGACGCAAGATGAAAAAGTAAAACATTTCTTTATGGCGGGGCCTGCGGGCATTCCGACCACTAAAGCCTTTAGC CAAGATTGTCGCTGGCCGTCACTGGATAATGACAGGCAAGAAGGCTGTATCCGTAGCCGCGAGTTTGCCTTCAGCCAAGA GGGCGGTCTTGCCGTATTGTCGGGCAACGTGGCCGAAAATGGCTGTATCGTTAAAACGGCGGGCGTGGATGAATCGAATC TGACCTTTGTTGGCTCGGCGCGCGTCTATGAAAGCCAAGATGACGCCGTGGCGGGCATTTTAGGCGGCGAAGTGGTGGCG GGTGATGTGGTTGTTATCCGTTACGAAGGCCCGAAAGGCGGCCCGGGTATGCAAGAAATGTTGTACCCAACCAGTTACTT AAAATCACGTGGCTTAGGCAAGGCCTGTGCGCTGATCACCGACGGTCGTTTCTCCGGTGGCACTTCAGGTTTATCTATCG GCCACGTTTCACCCGAAGCAGCAGCGGGCGGCACGATCGCCTTGATTGAAAATGGCGATCGCATCGAAATTGATATACCA AAGCGCAGCATCAAGTTGGCAGTAAGCGATGTTGAACTCAATGCTCGCCGCGAAAAAATGCACAGTCTTGGCCCAATGGC GTGGAAACCTATCGGTCGCCAACGTTATGTATCACTCGCGCTTAAGGCCTACGCCATGCTCGCTACCAGTGCCGACAAGG GCGCGGTGCGCGATCGCAGTAAACTGGAGGACTAA
Upstream 100 bases:
>100_bases GTGACTATGAGTGCCAGATATTGAGGGGAATGCGGCAAGTGCAGCATTCACCATGTGAATTAAGAATACGATTTTCGATT TGAGATAAAGGATACAGTCA
Downstream 100 bases:
>100_bases TATGTTGCCACTTGCATCGCAAGCTCGGACGGATTTAGCACATTTTCAGTTGGCACAAAGCTATCTGCAAAAAATCCTGT TGTCATCTGTGTATGACATA
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 624; Mature: 623
Protein sequence:
>624_residues MPKLRSATSTEGRNMAGARALWRATGVKDNDFGKPIIAISNSFTQFVPGHVHLKDMGSLVASAIEEAGGIAKEFNTIAVD DGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADALVCISNCDKITPGMLMAALRLNIPVVFVSGGPMEAGKTKLSDKLI KLDLVDAMVAGADSNVSDEDSAKIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSMLATHADRRELFLEAGRRVM ALAKRYYHQDDESALPRNIANFKAFENAMTLDIAMGGSSNTVLHLLAAAQEADVDFTMADIDRMSRLVPHLCKVAPSTPK YHMEDVHRAGGVMGILGELDRAGLLHTDVFHVAADNDGTPGSGTLKSVLAQYDVMQTQDEKVKHFFMAGPAGIPTTKAFS QDCRWPSLDNDRQEGCIRSREFAFSQEGGLAVLSGNVAENGCIVKTAGVDESNLTFVGSARVYESQDDAVAGILGGEVVA GDVVVIRYEGPKGGPGMQEMLYPTSYLKSRGLGKACALITDGRFSGGTSGLSIGHVSPEAAAGGTIALIENGDRIEIDIP KRSIKLAVSDVELNARREKMHSLGPMAWKPIGRQRYVSLALKAYAMLATSADKGAVRDRSKLED
Sequences:
>Translated_624_residues MPKLRSATSTEGRNMAGARALWRATGVKDNDFGKPIIAISNSFTQFVPGHVHLKDMGSLVASAIEEAGGIAKEFNTIAVD DGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADALVCISNCDKITPGMLMAALRLNIPVVFVSGGPMEAGKTKLSDKLI KLDLVDAMVAGADSNVSDEDSAKIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSMLATHADRRELFLEAGRRVM ALAKRYYHQDDESALPRNIANFKAFENAMTLDIAMGGSSNTVLHLLAAAQEADVDFTMADIDRMSRLVPHLCKVAPSTPK YHMEDVHRAGGVMGILGELDRAGLLHTDVFHVAADNDGTPGSGTLKSVLAQYDVMQTQDEKVKHFFMAGPAGIPTTKAFS QDCRWPSLDNDRQEGCIRSREFAFSQEGGLAVLSGNVAENGCIVKTAGVDESNLTFVGSARVYESQDDAVAGILGGEVVA GDVVVIRYEGPKGGPGMQEMLYPTSYLKSRGLGKACALITDGRFSGGTSGLSIGHVSPEAAAGGTIALIENGDRIEIDIP KRSIKLAVSDVELNARREKMHSLGPMAWKPIGRQRYVSLALKAYAMLATSADKGAVRDRSKLED >Mature_623_residues PKLRSATSTEGRNMAGARALWRATGVKDNDFGKPIIAISNSFTQFVPGHVHLKDMGSLVASAIEEAGGIAKEFNTIAVDD GIAMGHGGMLYSLPSRELIADSVEYMVNAHCADALVCISNCDKITPGMLMAALRLNIPVVFVSGGPMEAGKTKLSDKLIK LDLVDAMVAGADSNVSDEDSAKIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSMLATHADRRELFLEAGRRVMA LAKRYYHQDDESALPRNIANFKAFENAMTLDIAMGGSSNTVLHLLAAAQEADVDFTMADIDRMSRLVPHLCKVAPSTPKY HMEDVHRAGGVMGILGELDRAGLLHTDVFHVAADNDGTPGSGTLKSVLAQYDVMQTQDEKVKHFFMAGPAGIPTTKAFSQ DCRWPSLDNDRQEGCIRSREFAFSQEGGLAVLSGNVAENGCIVKTAGVDESNLTFVGSARVYESQDDAVAGILGGEVVAG DVVVIRYEGPKGGPGMQEMLYPTSYLKSRGLGKACALITDGRFSGGTSGLSIGHVSPEAAAGGTIALIENGDRIEIDIPK RSIKLAVSDVELNARREKMHSLGPMAWKPIGRQRYVSLALKAYAMLATSADKGAVRDRSKLED
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=622, Percent_Identity=78.7781350482315, Blast_Score=1009, Evalue=0.0, Organism=Escherichia coli, GI1788157, Length=555, Percent_Identity=30.4504504504505, Blast_Score=183, Evalue=2e-47, Organism=Escherichia coli, GI2367371, Length=518, Percent_Identity=30.6949806949807, Blast_Score=179, Evalue=4e-46, Organism=Escherichia coli, GI1786464, Length=538, Percent_Identity=29.7397769516729, Blast_Score=168, Evalue=1e-42, Organism=Saccharomyces cerevisiae, GI6322476, Length=619, Percent_Identity=36.0258481421648, Blast_Score=329, Evalue=1e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 66284; Mature: 66153
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: PS00886 ILVD_EDD_1 ; PS00887 ILVD_EDD_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKLRSATSTEGRNMAGARALWRATGVKDNDFGKPIIAISNSFTQFVPGHVHLKDMGSLV CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCEEEHHHHHHHH ASAIEEAGGIAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADALVCIS HHHHHHHCCCHHHCCEEEECCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH NCDKITPGMLMAALRLNIPVVFVSGGPMEAGKTKLSDKLIKLDLVDAMVAGADSNVSDED CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHEEHHHHHHHHHCCCCCCCCCH SAKIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSMLATHADRRELFLEAGRRVM HHHHHHHCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHCHHHH ALAKRYYHQDDESALPRNIANFKAFENAMTLDIAMGGSSNTVLHLLAAAQEADVDFTMAD HHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEHHH IDRMSRLVPHLCKVAPSTPKYHMEDVHRAGGVMGILGELDRAGLLHTDVFHVAADNDGTP HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEHHHHHCCCCCEEEEEEEEEECCCCCC GSGTLKSVLAQYDVMQTQDEKVKHFFMAGPAGIPTTKAFSQDCRWPSLDNDRQEGCIRSR CCHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHH EFAFSQEGGLAVLSGNVAENGCIVKTAGVDESNLTFVGSARVYESQDDAVAGILGGEVVA HCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCEEEEECCEEECCCCCCEEEEECCCEEE GDVVVIRYEGPKGGPGMQEMLYPTSYLKSRGLGKACALITDGRFSGGTSGLSIGHVSPEA CCEEEEEECCCCCCCCHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCC AAGGTIALIENGDRIEIDIPKRSIKLAVSDVELNARREKMHSLGPMAWKPIGRQRYVSLA CCCCEEEEEECCCEEEEECCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHH LKAYAMLATSADKGAVRDRSKLED HHHHHHHHCCCCCCCCCCHHHCCC >Mature Secondary Structure PKLRSATSTEGRNMAGARALWRATGVKDNDFGKPIIAISNSFTQFVPGHVHLKDMGSLV CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCEEEHHHHHHHH ASAIEEAGGIAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADALVCIS HHHHHHHCCCHHHCCEEEECCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH NCDKITPGMLMAALRLNIPVVFVSGGPMEAGKTKLSDKLIKLDLVDAMVAGADSNVSDED CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHEEHHHHHHHHHCCCCCCCCCH SAKIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSMLATHADRRELFLEAGRRVM HHHHHHHCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHCHHHH ALAKRYYHQDDESALPRNIANFKAFENAMTLDIAMGGSSNTVLHLLAAAQEADVDFTMAD HHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEHHH IDRMSRLVPHLCKVAPSTPKYHMEDVHRAGGVMGILGELDRAGLLHTDVFHVAADNDGTP HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEHHHHHCCCCCEEEEEEEEEECCCCCC GSGTLKSVLAQYDVMQTQDEKVKHFFMAGPAGIPTTKAFSQDCRWPSLDNDRQEGCIRSR CCHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHH EFAFSQEGGLAVLSGNVAENGCIVKTAGVDESNLTFVGSARVYESQDDAVAGILGGEVVA HCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCEEEEECCEEECCCCCCEEEEECCCEEE GDVVVIRYEGPKGGPGMQEMLYPTSYLKSRGLGKACALITDGRFSGGTSGLSIGHVSPEA CCEEEEEECCCCCCCCHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCC AAGGTIALIENGDRIEIDIPKRSIKLAVSDVELNARREKMHSLGPMAWKPIGRQRYVSLA CCCCEEEEEECCCEEEEECCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHH LKAYAMLATSADKGAVRDRSKLED HHHHHHHHCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA