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The map label for this gene is asnC [H]

Identifier: 160876811

GI number: 160876811

Start: 4373838

End: 4374332

Strand: Direct

Name: asnC [H]

Synonym: Sbal195_3707

Alternate gene names: 160876811

Gene position: 4373838-4374332 (Clockwise)

Preceding gene: 160876810

Following gene: 160876812

Centisome position: 81.8

GC content: 45.86

Gene sequence:

>495_bases
ATGACAATTCATTACGTTATAGAGAGTTTATTTATGGATACCGCATTTCAGCGCGATCAACTCGATAATCATATCCTCGA
AGCCCTAATGCAGGATGCCCGCACGCCCTTTGCCGAACTCGCTAAACGCTTTAGCGTTAGCGCTGGCACTATCCATGTTC
GGGTAGAAAAAATGAAGCAAGCGGGGATAATCACAGGCGCGCAGATCACAGTAAACCCTAAAGCCTTAGGTTATGACGTC
TGCTGTTTTATCGGTATCAATCTTAAAAGTGCAGGCGATTACCCCGCCGCCATAGCCAAACTCAACGCCCTCGAAGAAGT
CGTCGAAGCCTATTACACCACAGGCAACTACAGTATTTTCGTAAAGGTAATGTGCCAATCCATCGATGGTTTACAGCACG
TACTCATCAATCGCATTCAATCGATCGATGAAATCCAGTCGACAGAAACCTTAATCAGCCTACAAAACCCAATAGTCAGA
GCGGTTAAGCCTTAG

Upstream 100 bases:

>100_bases
CAGAAGCGCCTTTTTGTGAGCCTTTGGGCGAACAATGATCACTAAAATCAACTAAGACGGGCAAAATCGGTAGCAATTCC
CCATAAAAAAACGTAACTTT

Downstream 100 bases:

>100_bases
GCTACAAAACAGCAAGCACACACAAACAGAACGACGCACTGCAAAGTGTGATTAACATCTTTTTAACTGCGAAAGTGTTA
ACCATACTGTATTTTTGTGT

Product: DNA-binding transcriptional regulator AsnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MTIHYVIESLFMDTAFQRDQLDNHILEALMQDARTPFAELAKRFSVSAGTIHVRVEKMKQAGIITGAQITVNPKALGYDV
CCFIGINLKSAGDYPAAIAKLNALEEVVEAYYTTGNYSIFVKVMCQSIDGLQHVLINRIQSIDEIQSTETLISLQNPIVR
AVKP

Sequences:

>Translated_164_residues
MTIHYVIESLFMDTAFQRDQLDNHILEALMQDARTPFAELAKRFSVSAGTIHVRVEKMKQAGIITGAQITVNPKALGYDV
CCFIGINLKSAGDYPAAIAKLNALEEVVEAYYTTGNYSIFVKVMCQSIDGLQHVLINRIQSIDEIQSTETLISLQNPIVR
AVKP
>Mature_163_residues
TIHYVIESLFMDTAFQRDQLDNHILEALMQDARTPFAELAKRFSVSAGTIHVRVEKMKQAGIITGAQITVNPKALGYDVC
CFIGINLKSAGDYPAAIAKLNALEEVVEAYYTTGNYSIFVKVMCQSIDGLQHVLINRIQSIDEIQSTETLISLQNPIVRA
VKP

Specific function: Activator of asnA transcription; autogenous regulator of its own transcription; and repressor of the expression of gidA at a post-transcriptional level [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=146, Percent_Identity=77.3972602739726, Blast_Score=235, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18190; Mature: 18059

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIHYVIESLFMDTAFQRDQLDNHILEALMQDARTPFAELAKRFSVSAGTIHVRVEKMKQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEHHHHHH
AGIITGAQITVNPKALGYDVCCFIGINLKSAGDYPAAIAKLNALEEVVEAYYTTGNYSIF
CCCEECCEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
VKVMCQSIDGLQHVLINRIQSIDEIQSTETLISLQNPIVRAVKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
>Mature Secondary Structure 
TIHYVIESLFMDTAFQRDQLDNHILEALMQDARTPFAELAKRFSVSAGTIHVRVEKMKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEHHHHHH
AGIITGAQITVNPKALGYDVCCFIGINLKSAGDYPAAIAKLNALEEVVEAYYTTGNYSIF
CCCEECCEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
VKVMCQSIDGLQHVLINRIQSIDEIQSTETLISLQNPIVRAVKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]