| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is 160876701
Identifier: 160876701
GI number: 160876701
Start: 4229012
End: 4231624
Strand: Reverse
Name: 160876701
Synonym: Sbal195_3595
Alternate gene names: NA
Gene position: 4231624-4229012 (Counterclockwise)
Preceding gene: 160876702
Following gene: 160876700
Centisome position: 79.14
GC content: 46.42
Gene sequence:
>2613_bases ATGGATAATGTTAATAAGTTAACGGCGATTTCTTTAGCTGTCGCAGCAGCTTTGCCTATGATGGCAAGCGCAGATGTGAT GATTACCGAATATGTTGAAGGTAGCGCAAACAATAAAGCGATTGAACTGTATAACAGCGGCGATACGGCAATTGATCTCG CGGGTTATAAACTGGTTCGTTATAAAGATGGGGCAACTGTTGCATCAGATATGGTGGCATTAGATGGCCAATCCATTGCG CCTAAAACGACTAAAGTCATTTTAAATTCTAGCGCTGTGATCACGCTTGACCAAGGTGTTGACAGTTACTCTGGCAGTTT AAGTTTTAATGGTGGTGATGCGGTCGCACTCGTTAAAGATGATGCGGTTGTCGATATTATTGGCGATGTACCAACACCAA CGGGTTGGGGATTCGACGTTACCTTAAAACGTAAATTAGATGCGTTAGTGGCGAATACGGTATTTAATGCCGCCCAGTGG GAACAATTACCTAAAGATACCTTCTCAGGATTAGGTTATCTAGAAGCCCCAGCAGAGCCAGAAGTGCCGCTCTTTAGCTG CAGCGGCGCTAAAATAGTGCCGATTTATCAAGTACAAGGTGCGGGTGAGTCTAGCCCTTACGTTCCAGAAGGTGCATTTG AATCTGAAGCTGAAGTCACAGTGCGCGGTGTCGTGACTGCCCGTGGCGAAAGCTTGTTTAAAGGTTTTTATCTACAAGAA GTGAAAGGTGATAACTCACCGTATACCTCTGATGGTGTGTTTGTATTCTTAGGTGAAGCGGTACCTGAAGCGATTCAACC TGGGGTTGAGGTTTGTGTACAAGGTAAAGTGAAAGAATACTTTGGCTTAACTCAAATCGATATTAAAGCCGATAAGAAAT TTGAAGTCGGCGCTAAGGGTGAAGTTCCAGTTGCCGCGCCTTTCTATGTCGCCGATGGCGAAACCTTAGCGCAAGCATTA GAGCGTTATGAAGGCATGAATGTGGCTTTAGATGCGGGCAGCGATCTTAAGATCAGCCGTACCTTCAGCTATGATTACGC TGGCCGTCGCAACAACATGTTAGTGTCTTATAAAGAACCGCTAATGAAGTCGACACAGCTTTATCCCGCGCTTTCTGCTG AAGCGACTGCGTTAGTTAAATCTAACCTCGAAAACCAACTCTTTATCGAATCTGATTACAAACCTGCCGACGGTGTAATT CCATACTTCCCTGATTTCAATGTGGAAACGGGCTATATCCGTGTGGGCGACCAACTGACTAACCTGCAAGGCGTGATTGG TTACAGCTACGGTGCTTATCGTTTAGTGGCAACTAACACTATTACAGCGGGTGATTTTATCCGTGGTGATGATAGAACTG ATGCCCCAAGCGTCGCCACTAAGGGCGATCTGCGCGTGGCTAGCTTTAACGTTTTGAACTTCTTTAACGATGTTGATGGT GGTGATATCAATCCATCAGGTAGTAACCGTGGCGCCCTAACGCTGGAAGAAATGGTGCTACAACGCACTAAAATCGTTAG CGCTATTACTGCCATGAACGCCGATATCGTCGGTCTGATGGAAATTGCCAACAACGGTTTTGGTGAGAAGAGTGCGATTA AAAACTTAGTCGATGCACTGAACGAGAAGCAAACGCCTGAAAACGCTTATAGCTTTGTTGAAATCACCGACGCCGACAAG TATGACGGCAAGTACTTTGGCACTGATGCTATCACTGTGGGCATGTTATACCGCGGCGGCAAAGTGACCTTAGCGGGTGC TGCTCAAGCTATCGATACTCCTGAGCAACATGCCAGTGCTGGCAGCGTGACTCGTACTAAAGATGGCAAAACTGAGACAA ATCCAGGTAACGATGCTTACCAACGTCACAGCTTAGCGCAAACCTTTAAAATCCATGATGAGTCGCTGACCGTAGTCGTT AACCATTTGAAATCTAAAGGCTCAGGCTGTTTAGAAGATTGGGCTAACTTCGAAGAGTCAGTCGATCCTGCCGATCAACA GGGCAAGTGTAATGCTTTCCGCGTATCTGCAGCCAAAGTCTTGGGTGAAACGCTAAAAGACGTGAAGGGCGACTTACTGA TCATCGGTGATATGAATGCCTACGGCATGGAAGATCCTATCCGTGTGCTGACCGATTTTGATGCGAGCAAGTCAGATCGT GACATCATGACCGCTTCGTGGACGACGCTCGATGGCAAAGTATTTGAACGCCAAGGCAGCAAGATTGAAAAAGGTTATGG CCTGATCAACTTGAACACGAAAGCCCACGGTGCAGGCACTTACTCTTACAGCTATAACGGCGAGCTAGGCAACTTAGACC ACGCTTTAGCCAATGCTAGCTTAGCCAAACGTTTAGTGGATATTGAAGATTGGCACATCAACTCAGTGGAATCTAACCTG TTTGAATACGGTAAGAAGTTCTCTGGTGATCTAGCTAAATCTGAAAATGCATTCTCTGCATCGGACCACGATCCTGTGAT CGTTGCCTTAAGCTACCCAGCGCCAGTAGTGCCACCAAAACCTGAGCCAACGCCTAAAGATGATGGCGGTGCTTTGGGTT ATTTAGGTTTAGCACTGATGTCCTTGTTTGGTTTACAACGTCGTCGCCGTTAA
Upstream 100 bases:
>100_bases GTGCGATCTTGCCCTCTTTTTTTAAGCATTCAACTCTGAAATAATCCGCCCGCACGTTAATAGAAGTTAGCGGCAATATT ATAATAATGGGGTTGATGAT
Downstream 100 bases:
>100_bases CCTGTGTAACGGGTGAACTCACAAGTGTTATTTGTGAGCTAGACTGAAACGAAGGGATGGTTCGCCATCCCTTTTTTAGT TGTTTATTTCAGTTTTTATT
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: Extracellular Nuclease; Nuclease; Endonuclease/Exonuclease/Phosphatase Family Protein; 5-Nucleotidase Domain Protein; 5-Nucleotidase Domain-Containing Protein; Extracellular Nuclease-Like Protein; Endonuclease/Exonuclease/Phosphatase Family; Endonuclease I; Extracellular Ribonuclease/Nuclease Fusion Protein; 5-Nucleotidase; PKD Domain-Containing Protein; Exported Nuclease; Outer Membrane Adhesin Like Proteiin; LPXTG-Motif Cell Wall Anchor Domain Protein; 5-Nucleotidase/2' 3'-Cyclic Phosphodiesterase; Calcineurin-Like Phosphoesterase; Extracellular Nuclease-Like; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; DNA/RNA Non-Specific Endonuclease; Extracellular Nuclease/Phosphatase; 5-Nucleotidase Family Protein
Number of amino acids: Translated: 870; Mature: 870
Protein sequence:
>870_residues MDNVNKLTAISLAVAAALPMMASADVMITEYVEGSANNKAIELYNSGDTAIDLAGYKLVRYKDGATVASDMVALDGQSIA PKTTKVILNSSAVITLDQGVDSYSGSLSFNGGDAVALVKDDAVVDIIGDVPTPTGWGFDVTLKRKLDALVANTVFNAAQW EQLPKDTFSGLGYLEAPAEPEVPLFSCSGAKIVPIYQVQGAGESSPYVPEGAFESEAEVTVRGVVTARGESLFKGFYLQE VKGDNSPYTSDGVFVFLGEAVPEAIQPGVEVCVQGKVKEYFGLTQIDIKADKKFEVGAKGEVPVAAPFYVADGETLAQAL ERYEGMNVALDAGSDLKISRTFSYDYAGRRNNMLVSYKEPLMKSTQLYPALSAEATALVKSNLENQLFIESDYKPADGVI PYFPDFNVETGYIRVGDQLTNLQGVIGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDLRVASFNVLNFFNDVDG GDINPSGSNRGALTLEEMVLQRTKIVSAITAMNADIVGLMEIANNGFGEKSAIKNLVDALNEKQTPENAYSFVEITDADK YDGKYFGTDAITVGMLYRGGKVTLAGAAQAIDTPEQHASAGSVTRTKDGKTETNPGNDAYQRHSLAQTFKIHDESLTVVV NHLKSKGSGCLEDWANFEESVDPADQQGKCNAFRVSAAKVLGETLKDVKGDLLIIGDMNAYGMEDPIRVLTDFDASKSDR DIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSYSYNGELGNLDHALANASLAKRLVDIEDWHINSVESNL FEYGKKFSGDLAKSENAFSASDHDPVIVALSYPAPVVPPKPEPTPKDDGGALGYLGLALMSLFGLQRRRR
Sequences:
>Translated_870_residues MDNVNKLTAISLAVAAALPMMASADVMITEYVEGSANNKAIELYNSGDTAIDLAGYKLVRYKDGATVASDMVALDGQSIA PKTTKVILNSSAVITLDQGVDSYSGSLSFNGGDAVALVKDDAVVDIIGDVPTPTGWGFDVTLKRKLDALVANTVFNAAQW EQLPKDTFSGLGYLEAPAEPEVPLFSCSGAKIVPIYQVQGAGESSPYVPEGAFESEAEVTVRGVVTARGESLFKGFYLQE VKGDNSPYTSDGVFVFLGEAVPEAIQPGVEVCVQGKVKEYFGLTQIDIKADKKFEVGAKGEVPVAAPFYVADGETLAQAL ERYEGMNVALDAGSDLKISRTFSYDYAGRRNNMLVSYKEPLMKSTQLYPALSAEATALVKSNLENQLFIESDYKPADGVI PYFPDFNVETGYIRVGDQLTNLQGVIGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDLRVASFNVLNFFNDVDG GDINPSGSNRGALTLEEMVLQRTKIVSAITAMNADIVGLMEIANNGFGEKSAIKNLVDALNEKQTPENAYSFVEITDADK YDGKYFGTDAITVGMLYRGGKVTLAGAAQAIDTPEQHASAGSVTRTKDGKTETNPGNDAYQRHSLAQTFKIHDESLTVVV NHLKSKGSGCLEDWANFEESVDPADQQGKCNAFRVSAAKVLGETLKDVKGDLLIIGDMNAYGMEDPIRVLTDFDASKSDR DIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSYSYNGELGNLDHALANASLAKRLVDIEDWHINSVESNL FEYGKKFSGDLAKSENAFSASDHDPVIVALSYPAPVVPPKPEPTPKDDGGALGYLGLALMSLFGLQRRRR >Mature_870_residues MDNVNKLTAISLAVAAALPMMASADVMITEYVEGSANNKAIELYNSGDTAIDLAGYKLVRYKDGATVASDMVALDGQSIA PKTTKVILNSSAVITLDQGVDSYSGSLSFNGGDAVALVKDDAVVDIIGDVPTPTGWGFDVTLKRKLDALVANTVFNAAQW EQLPKDTFSGLGYLEAPAEPEVPLFSCSGAKIVPIYQVQGAGESSPYVPEGAFESEAEVTVRGVVTARGESLFKGFYLQE VKGDNSPYTSDGVFVFLGEAVPEAIQPGVEVCVQGKVKEYFGLTQIDIKADKKFEVGAKGEVPVAAPFYVADGETLAQAL ERYEGMNVALDAGSDLKISRTFSYDYAGRRNNMLVSYKEPLMKSTQLYPALSAEATALVKSNLENQLFIESDYKPADGVI PYFPDFNVETGYIRVGDQLTNLQGVIGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDLRVASFNVLNFFNDVDG GDINPSGSNRGALTLEEMVLQRTKIVSAITAMNADIVGLMEIANNGFGEKSAIKNLVDALNEKQTPENAYSFVEITDADK YDGKYFGTDAITVGMLYRGGKVTLAGAAQAIDTPEQHASAGSVTRTKDGKTETNPGNDAYQRHSLAQTFKIHDESLTVVV NHLKSKGSGCLEDWANFEESVDPADQQGKCNAFRVSAAKVLGETLKDVKGDLLIIGDMNAYGMEDPIRVLTDFDASKSDR DIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSYSYNGELGNLDHALANASLAKRLVDIEDWHINSVESNL FEYGKKFSGDLAKSENAFSASDHDPVIVALSYPAPVVPPKPEPTPKDDGGALGYLGLALMSLFGLQRRRR
Specific function: Unknown
COG id: COG2374
COG function: function code R; Predicted extracellular nuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93367; Mature: 93367
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNVNKLTAISLAVAAALPMMASADVMITEYVEGSANNKAIELYNSGDTAIDLAGYKLVR CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCEEEECCEEEEE YKDGATVASDMVALDGQSIAPKTTKVILNSSAVITLDQGVDSYSGSLSFNGGDAVALVKD EECCCCHHHHHEEECCCCCCCCCEEEEECCCEEEEECCCCCCCCCEEEECCCCEEEEEEC DAVVDIIGDVPTPTGWGFDVTLKRKLDALVANTVFNAAQWEQLPKDTFSGLGYLEAPAEP CCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHCHHHHHHCCHHHHCCCCEECCCCCC EVPLFSCSGAKIVPIYQVQGAGESSPYVPEGAFESEAEVTVRGVVTARGESLFKGFYLQE CCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHEE VKGDNSPYTSDGVFVFLGEAVPEAIQPGVEVCVQGKVKEYFGLTQIDIKADKKFEVGAKG ECCCCCCCCCCCEEEEECCCCCHHHCCCHHEEECCCHHHHHCCEEEEEECCCEEECCCCC EVPVAAPFYVADGETLAQALERYEGMNVALDAGSDLKISRTFSYDYAGRRNNMLVSYKEP CCCEECEEEEECCHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEECHH LMKSTQLYPALSAEATALVKSNLENQLFIESDYKPADGVIPYFPDFNVETGYIRVGDQLT HHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEECEEEECCHHC NLQGVIGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDLRVASFNVLNFFNDVDG CCCEEEECCCCEEEEEEECEEECCCEECCCCCCCCCCCCCCCCEEEEEEHHHHHHCCCCC GDINPSGSNRGALTLEEMVLQRTKIVSAITAMNADIVGLMEIANNGFGEKSAIKNLVDAL CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCCHHHHHHHHHHH NEKQTPENAYSFVEITDADKYDGKYFGTDAITVGMLYRGGKVTLAGAAQAIDTPEQHASA HCCCCCCCCEEEEEEECCCCCCCEEECCCEEEEEEEEECCEEEEECCHHHCCCCHHHCCC GSVTRTKDGKTETNPGNDAYQRHSLAQTFKIHDESLTVVVNHLKSKGSGCLEDWANFEES CCCEECCCCCCCCCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCHHHHHHCHHHC VDPADQQGKCNAFRVSAAKVLGETLKDVKGDLLIIGDMNAYGMEDPIRVLTDFDASKSDR CCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHEECCCCCCCCC DIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSYSYNGELGNLDHALANAS CEEEEEEEECCCHHHHHCCCEECCCCEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHH LAKRLVDIEDWHINSVESNLFEYGKKFSGDLAKSENAFSASDHDPVIVALSYPAPVVPPK HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC PEPTPKDDGGALGYLGLALMSLFGLQRRRR CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDNVNKLTAISLAVAAALPMMASADVMITEYVEGSANNKAIELYNSGDTAIDLAGYKLVR CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCEEEECCEEEEE YKDGATVASDMVALDGQSIAPKTTKVILNSSAVITLDQGVDSYSGSLSFNGGDAVALVKD EECCCCHHHHHEEECCCCCCCCCEEEEECCCEEEEECCCCCCCCCEEEECCCCEEEEEEC DAVVDIIGDVPTPTGWGFDVTLKRKLDALVANTVFNAAQWEQLPKDTFSGLGYLEAPAEP CCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHCHHHHHHCCHHHHCCCCEECCCCCC EVPLFSCSGAKIVPIYQVQGAGESSPYVPEGAFESEAEVTVRGVVTARGESLFKGFYLQE CCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHEE VKGDNSPYTSDGVFVFLGEAVPEAIQPGVEVCVQGKVKEYFGLTQIDIKADKKFEVGAKG ECCCCCCCCCCCEEEEECCCCCHHHCCCHHEEECCCHHHHHCCEEEEEECCCEEECCCCC EVPVAAPFYVADGETLAQALERYEGMNVALDAGSDLKISRTFSYDYAGRRNNMLVSYKEP CCCEECEEEEECCHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEECHH LMKSTQLYPALSAEATALVKSNLENQLFIESDYKPADGVIPYFPDFNVETGYIRVGDQLT HHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEECEEEECCHHC NLQGVIGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDLRVASFNVLNFFNDVDG CCCEEEECCCCEEEEEEECEEECCCEECCCCCCCCCCCCCCCCEEEEEEHHHHHHCCCCC GDINPSGSNRGALTLEEMVLQRTKIVSAITAMNADIVGLMEIANNGFGEKSAIKNLVDAL CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCCHHHHHHHHHHH NEKQTPENAYSFVEITDADKYDGKYFGTDAITVGMLYRGGKVTLAGAAQAIDTPEQHASA HCCCCCCCCEEEEEEECCCCCCCEEECCCEEEEEEEEECCEEEEECCHHHCCCCHHHCCC GSVTRTKDGKTETNPGNDAYQRHSLAQTFKIHDESLTVVVNHLKSKGSGCLEDWANFEES CCCEECCCCCCCCCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCHHHHHHCHHHC VDPADQQGKCNAFRVSAAKVLGETLKDVKGDLLIIGDMNAYGMEDPIRVLTDFDASKSDR CCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHEECCCCCCCCC DIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSYSYNGELGNLDHALANAS CEEEEEEEECCCHHHHHCCCEECCCCEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHH LAKRLVDIEDWHINSVESNLFEYGKKFSGDLAKSENAFSASDHDPVIVALSYPAPVVPPK HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC PEPTPKDDGGALGYLGLALMSLFGLQRRRR CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA