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The map label for this gene is siaP [H]

Identifier: 160876672

GI number: 160876672

Start: 4191210

End: 4192412

Strand: Reverse

Name: siaP [H]

Synonym: Sbal195_3566

Alternate gene names: 160876672

Gene position: 4192412-4191210 (Counterclockwise)

Preceding gene: 160876673

Following gene: 160876671

Centisome position: 78.4

GC content: 49.63

Gene sequence:

>1203_bases
ATGCGATTGCGGAGCTCTGTCCTGAGAGCATGTTCACGTCTGTTAGAACCATGGGCTCGTTTGATGTCAGGGAGAGTATT
AAAAATGCGTAAGTTTGGGAGTGTACTCGTCTTAATGCTGCTGATGGGGCTGAGCGGTTGTAACCCCGCAGCCAGTGACG
CGCAAAGCGTAGCCGTTTCCCATGCCGCAACGGATGACCCCCAAGCTATTCCCGCTATTGAATGGCGCCTTGCGACCTCT
TGGCCCAAAAACTTCCCCGGTTTAGGTATGGCTCCAGAACGCTTTGCCCATTTAGTCGATGACATGTCTAACGGTCGGTT
AAAGATCCAGGTTTATGGCGCGGGTGAGTTAATGCCAGCGTTTGCCGTATTTGATGGTGTGAGTCAGGGCAAAATTCAAA
TGGCCCATGCCGCTTCTTATTATTGGAAAGGCAAGGCACCCGCGGCGCAGTTTTTTTCATCGATTCCTTTTGGTATGACA
GCGCAAGAAATGAACGGCTGGTTGCACTACGGCGGTGGCATGGCGTTGTGGGAAGAAGTGTATCGCCCCTTTGGCATCAT
TCCCCTCGCAGGTGGCAATACGGGCATGCAAATGGGCGGCTGGTTCAATAAACCGATTAATACGATTGCTGATTTTAAGG
GGCTGAAGATCCGCATGCCGGGCTTGGGCGGCGAAGTCTTAAAACGTGTTGGCGCTATACCTGTGAATATGGCGGGGCGT
GAACTCTATGGTGCCCTGCAAACGGGCTCGATTGATGCGGCAGAGTGGGTGGGGCCATTGAACGACCTTGCTTTTGGTTT
ACATAAAGTGGCGAAGTACTACTATTACCCAGGTTGGCATGAGCCGGGTTCCAATATGGAATTTTTGATTAATAAAGCTG
CCTTCGAGAGTTTACCTCAAGATTTACAAGCCATAGTGAGAGTCGCGGCGAGAGCGATTAACCAAGATATGCTCGATGAA
TACACGACCCGCAATGTGACGGCCCTTGAAACCTTAGTGAATGATGAAGGGGTAGTGCTTAAAGCATTTCCACCGAAAGT
GTTGTTGGAACTTGAGAAAATCTCTAAACAAGTGATTGAAGAACAAGCCAATCAAGATCCTTTAATGCGCAAAGTGTACG
CCGCCTATCACGCCTACGAGCAAGGTGTACGCCAGTATCATAAAATATCTGAGGATGCTTACAGCCAACAGCGTCAACAC
TAA

Upstream 100 bases:

>100_bases
GGTCAAACTAAGGCCATTTTCTGGTTTCCTTGCCCGAGTTTCTGGTTTCCCTATAGGCGTTTCTGTGTTAACAATATGTT
CTATTTTAAGGGTTTGGGTG

Downstream 100 bases:

>100_bases
ATGTGGGGTGTTTTTAGCACTGACTGTCACATTAATCGCTGATTTATATGAGATGATTTCATCTTAAATTATCTTGTTAT
CGGCGTAATTCATTTGGTGT

Product: TRAP dicarboxylate transporter subunit DctP

Products: NA

Alternate protein names: Extracytoplasmic solute receptor protein siaP; N-acetylneuraminic-binding protein; Neu5Ac-binding protein [H]

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MRLRSSVLRACSRLLEPWARLMSGRVLKMRKFGSVLVLMLLMGLSGCNPAASDAQSVAVSHAATDDPQAIPAIEWRLATS
WPKNFPGLGMAPERFAHLVDDMSNGRLKIQVYGAGELMPAFAVFDGVSQGKIQMAHAASYYWKGKAPAAQFFSSIPFGMT
AQEMNGWLHYGGGMALWEEVYRPFGIIPLAGGNTGMQMGGWFNKPINTIADFKGLKIRMPGLGGEVLKRVGAIPVNMAGR
ELYGALQTGSIDAAEWVGPLNDLAFGLHKVAKYYYYPGWHEPGSNMEFLINKAAFESLPQDLQAIVRVAARAINQDMLDE
YTTRNVTALETLVNDEGVVLKAFPPKVLLELEKISKQVIEEQANQDPLMRKVYAAYHAYEQGVRQYHKISEDAYSQQRQH

Sequences:

>Translated_400_residues
MRLRSSVLRACSRLLEPWARLMSGRVLKMRKFGSVLVLMLLMGLSGCNPAASDAQSVAVSHAATDDPQAIPAIEWRLATS
WPKNFPGLGMAPERFAHLVDDMSNGRLKIQVYGAGELMPAFAVFDGVSQGKIQMAHAASYYWKGKAPAAQFFSSIPFGMT
AQEMNGWLHYGGGMALWEEVYRPFGIIPLAGGNTGMQMGGWFNKPINTIADFKGLKIRMPGLGGEVLKRVGAIPVNMAGR
ELYGALQTGSIDAAEWVGPLNDLAFGLHKVAKYYYYPGWHEPGSNMEFLINKAAFESLPQDLQAIVRVAARAINQDMLDE
YTTRNVTALETLVNDEGVVLKAFPPKVLLELEKISKQVIEEQANQDPLMRKVYAAYHAYEQGVRQYHKISEDAYSQQRQH
>Mature_400_residues
MRLRSSVLRACSRLLEPWARLMSGRVLKMRKFGSVLVLMLLMGLSGCNPAASDAQSVAVSHAATDDPQAIPAIEWRLATS
WPKNFPGLGMAPERFAHLVDDMSNGRLKIQVYGAGELMPAFAVFDGVSQGKIQMAHAASYYWKGKAPAAQFFSSIPFGMT
AQEMNGWLHYGGGMALWEEVYRPFGIIPLAGGNTGMQMGGWFNKPINTIADFKGLKIRMPGLGGEVLKRVGAIPVNMAGR
ELYGALQTGSIDAAEWVGPLNDLAFGLHKVAKYYYYPGWHEPGSNMEFLINKAAFESLPQDLQAIVRVAARAINQDMLDE
YTTRNVTALETLVNDEGVVLKAFPPKVLLELEKISKQVIEEQANQDPLMRKVYAAYHAYEQGVRQYHKISEDAYSQQRQH

Specific function: Part of the tripartite ATP-independent periplasmic (TRAP) transport system siaPT involved in the uptake of sialic acid. This protein specifically binds sialic acid [H]

COG id: COG4663

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 7 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018389
- InterPro:   IPR004682 [H]

Pfam domain/function: PF03480 SBP_bac_7 [H]

EC number: NA

Molecular weight: Translated: 44246; Mature: 44246

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRSSVLRACSRLLEPWARLMSGRVLKMRKFGSVLVLMLLMGLSGCNPAASDAQSVAVS
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
HAATDDPQAIPAIEWRLATSWPKNFPGLGMAPERFAHLVDDMSNGRLKIQVYGAGELMPA
HCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHH
FAVFDGVSQGKIQMAHAASYYWKGKAPAAQFFSSIPFGMTAQEMNGWLHYGGGMALWEEV
HHHHCCCCCCCEEHHHHHHHEECCCCHHHHHHHCCCCCCCHHHHCCEEEECCCHHHHHHH
YRPFGIIPLAGGNTGMQMGGWFNKPINTIADFKGLKIRMPGLGGEVLKRVGAIPVNMAGR
HCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCCCCH
ELYGALQTGSIDAAEWVGPLNDLAFGLHKVAKYYYYPGWHEPGSNMEFLINKAAFESLPQ
HHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
DLQAIVRVAARAINQDMLDEYTTRNVTALETLVNDEGVVLKAFPPKVLLELEKISKQVIE
HHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
EQANQDPLMRKVYAAYHAYEQGVRQYHKISEDAYSQQRQH
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRLRSSVLRACSRLLEPWARLMSGRVLKMRKFGSVLVLMLLMGLSGCNPAASDAQSVAVS
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
HAATDDPQAIPAIEWRLATSWPKNFPGLGMAPERFAHLVDDMSNGRLKIQVYGAGELMPA
HCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHH
FAVFDGVSQGKIQMAHAASYYWKGKAPAAQFFSSIPFGMTAQEMNGWLHYGGGMALWEEV
HHHHCCCCCCCEEHHHHHHHEECCCCHHHHHHHCCCCCCCHHHHCCEEEECCCHHHHHHH
YRPFGIIPLAGGNTGMQMGGWFNKPINTIADFKGLKIRMPGLGGEVLKRVGAIPVNMAGR
HCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCCCCH
ELYGALQTGSIDAAEWVGPLNDLAFGLHKVAKYYYYPGWHEPGSNMEFLINKAAFESLPQ
HHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
DLQAIVRVAARAINQDMLDEYTTRNVTALETLVNDEGVVLKAFPPKVLLELEKISKQVIE
HHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
EQANQDPLMRKVYAAYHAYEQGVRQYHKISEDAYSQQRQH
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA