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The map label for this gene is nqrD

Identifier: 160876666

GI number: 160876666

Start: 4183964

End: 4184596

Strand: Reverse

Name: nqrD

Synonym: Sbal195_3560

Alternate gene names: 160876666

Gene position: 4184596-4183964 (Counterclockwise)

Preceding gene: 160876667

Following gene: 160876665

Centisome position: 78.26

GC content: 45.81

Gene sequence:

>633_bases
ATGTCTGACGCTAAAGAACTGAAACAGGTTCTGACCGGACCTATAGTCAACAACAACCCGATTGCTTTACAAGTACTTGG
TGTATGTAGTGCATTAGCGGTAACGAGCAAGCTCGAAACTGCACTGGTAATGGCGTTGGCGTTAACTGCGGTAACAGCGT
TTTCGAACCTGTTTATCTCAATGATCCGTAATCATATTCCAAGCAGTGTGCGTATTATCGTACAGATGACCATTATTGCC
TCTTTGGTAATCGTGGTTGACCAATTGCTGCAGGCTTATGCTTATCAGATCTCTAAGCAGCTGTCGGTATTCGTCGGTCT
GATTATTACGAACTGTATCGTAATGGGTCGCGCCGAAGCCTACGCGATGAAAACACCGCCAATGATGAGCTTTATGGATG
GTATCGGTAACGGTTTAGGTTACGGTGCAATTCTATTAGCTGTTGGCTTCGTACGTGAACTGTTTGGTAACGGTTCTCTG
TTCGGTGTTGAAATCCTGCACAAGATCTCTGATGGCGGCTGGTACCAACCAAACGGTCTGCTACTACTGCCTCCGAGTGC
GTTCTTCCTGATCGGTGTTCTGATTTGGATTATTCGTACCTATAAGCCAGAGCAAGTTGAAGCAAAAGGGTAA

Upstream 100 bases:

>100_bases
CCTTAACGAGTAACGGTGTGCAACATTCACTGACATTCTGGTTAGGGAAAGAAGGTTTTGCGAGTTTCATTGAAAAAGCA
CGCAATGGAGGTCTCAACTA

Downstream 100 bases:

>100_bases
GTGCGATGGAACATTATATTAGCCTGTTAATTCGCTCTGTTTTCATTGAAAACATGGCACTGGCCTTCTTCCTAGGTATG
TGTACTTTCTTGGCTGTGTC

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSDAKELKQVLTGPIVNNNPIALQVLGVCSALAVTSKLETALVMALALTAVTAFSNLFISMIRNHIPSSVRIIVQMTIIA
SLVIVVDQLLQAYAYQISKQLSVFVGLIITNCIVMGRAEAYAMKTPPMMSFMDGIGNGLGYGAILLAVGFVRELFGNGSL
FGVEILHKISDGGWYQPNGLLLLPPSAFFLIGVLIWIIRTYKPEQVEAKG

Sequences:

>Translated_210_residues
MSDAKELKQVLTGPIVNNNPIALQVLGVCSALAVTSKLETALVMALALTAVTAFSNLFISMIRNHIPSSVRIIVQMTIIA
SLVIVVDQLLQAYAYQISKQLSVFVGLIITNCIVMGRAEAYAMKTPPMMSFMDGIGNGLGYGAILLAVGFVRELFGNGSL
FGVEILHKISDGGWYQPNGLLLLPPSAFFLIGVLIWIIRTYKPEQVEAKG
>Mature_209_residues
SDAKELKQVLTGPIVNNNPIALQVLGVCSALAVTSKLETALVMALALTAVTAFSNLFISMIRNHIPSSVRIIVQMTIIAS
LVIVVDQLLQAYAYQISKQLSVFVGLIITNCIVMGRAEAYAMKTPPMMSFMDGIGNGLGYGAILLAVGFVRELFGNGSLF
GVEILHKISDGGWYQPNGLLLLPPSAFFLIGVLIWIIRTYKPEQVEAKG

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787919, Length=205, Percent_Identity=39.5121951219512, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NQRD_SHEB2 (B8EC46)

Other databases:

- EMBL:   CP001252
- RefSeq:   YP_002359270.1
- GeneID:   7087189
- GenomeReviews:   CP001252_GR
- KEGG:   sbp:Sbal223_3363
- HOGENOM:   HBG624915
- OMA:   GGWYVPN
- ProtClustDB:   PRK09292
- HAMAP:   MF_00428
- InterPro:   IPR003667
- InterPro:   IPR011292
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01939

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 22614; Mature: 22483

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1f9e3ed0)-; HASH(0x21803da4)-; HASH(0x20bb2884)-; HASH(0x215860ac)-; HASH(0x20d3ee34)-; HASH(0x212d7598)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAKELKQVLTGPIVNNNPIALQVLGVCSALAVTSKLETALVMALALTAVTAFSNLFIS
CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIRNHIPSSVRIIVQMTIIASLVIVVDQLLQAYAYQISKQLSVFVGLIITNCIVMGRAEA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YAMKTPPMMSFMDGIGNGLGYGAILLAVGFVRELFGNGSLFGVEILHKISDGGWYQPNGL
HEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCE
LLLPPSAFFLIGVLIWIIRTYKPEQVEAKG
EEECCHHHHHHHHHHHHHHCCCCCCCCCCH
>Mature Secondary Structure 
SDAKELKQVLTGPIVNNNPIALQVLGVCSALAVTSKLETALVMALALTAVTAFSNLFIS
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIRNHIPSSVRIIVQMTIIASLVIVVDQLLQAYAYQISKQLSVFVGLIITNCIVMGRAEA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YAMKTPPMMSFMDGIGNGLGYGAILLAVGFVRELFGNGSLFGVEILHKISDGGWYQPNGL
HEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCE
LLLPPSAFFLIGVLIWIIRTYKPEQVEAKG
EEECCHHHHHHHHHHHHHHCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA