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The map label for this gene is ybaK [H]

Identifier: 160876645

GI number: 160876645

Start: 4161520

End: 4161996

Strand: Direct

Name: ybaK [H]

Synonym: Sbal195_3539

Alternate gene names: 160876645

Gene position: 4161520-4161996 (Clockwise)

Preceding gene: 160876644

Following gene: 160876646

Centisome position: 77.82

GC content: 51.15

Gene sequence:

>477_bases
ATGACCCCGGCCGTTCGATTGGCGAAAAAAGCCAAAATTGCGTTTGAAATCCTAGAGTACAGCCACGATCAACACTGCGC
CGCCTACGGCGAAGAAGCTGCCAACACCTTAGGACTCGAACCCGCACAAGTGTTTAAAACCCTTTTAGTCGCCATCGACA
AAGCCCATGCGCCAATTGCCGTTGCCCTCGTGCCCGTCGATCATCAGCTCAATCTAAAAGCCGTGGCAAAATGCTTAGGA
CAAAAGAAACTGCAAATGGCCGATGCCGAACTCGCGCAAAAATCCTCGGGCTATCTGGTTGGTGGCATTAGCCCGCTAGC
GCAGAAAAAACAGTTACCGACCTTAATTGATGTCAGCGCTCAAGGCTTCGACAGGATTTATGTCAGCGCGGGCCGACGCG
GTTTAGAGATAAGCTTAGCGGCCACAGACTTAGCCCAGCTTTGCAAAGGCAAATTTGCCGATATCAAGACGCTTTAA

Upstream 100 bases:

>100_bases
TCACTGTAATGAGCCAATTAAAGAACGTAAAAACCGAAGTGGCTAACGTTTTACATCTAAATTAAGCGCTAATATCACCC
ATTTTGTGAAGGAGTATAGA

Downstream 100 bases:

>100_bases
GCCACATCGACCACATTAAGCACAAGTCATTCGACGTTAAGCTATCCACTCCATTAAATAGCACACGCTCATGTTGGATA
ACTCGCAAACAAGACCCTAG

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTPAVRLAKKAKIAFEILEYSHDQHCAAYGEEAANTLGLEPAQVFKTLLVAIDKAHAPIAVALVPVDHQLNLKAVAKCLG
QKKLQMADAELAQKSSGYLVGGISPLAQKKQLPTLIDVSAQGFDRIYVSAGRRGLEISLAATDLAQLCKGKFADIKTL

Sequences:

>Translated_158_residues
MTPAVRLAKKAKIAFEILEYSHDQHCAAYGEEAANTLGLEPAQVFKTLLVAIDKAHAPIAVALVPVDHQLNLKAVAKCLG
QKKLQMADAELAQKSSGYLVGGISPLAQKKQLPTLIDVSAQGFDRIYVSAGRRGLEISLAATDLAQLCKGKFADIKTL
>Mature_157_residues
TPAVRLAKKAKIAFEILEYSHDQHCAAYGEEAANTLGLEPAQVFKTLLVAIDKAHAPIAVALVPVDHQLNLKAVAKCLGQ
KKLQMADAELAQKSSGYLVGGISPLAQKKQLPTLIDVSAQGFDRIYVSAGRRGLEISLAATDLAQLCKGKFADIKTL

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=155, Percent_Identity=58.7096774193548, Blast_Score=180, Evalue=5e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16865; Mature: 16734

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAVRLAKKAKIAFEILEYSHDQHCAAYGEEAANTLGLEPAQVFKTLLVAIDKAHAPIA
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEE
VALVPVDHQLNLKAVAKCLGQKKLQMADAELAQKSSGYLVGGISPLAQKKQLPTLIDVSA
EEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCEEEECCC
QGFDRIYVSAGRRGLEISLAATDLAQLCKGKFADIKTL
CCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TPAVRLAKKAKIAFEILEYSHDQHCAAYGEEAANTLGLEPAQVFKTLLVAIDKAHAPIA
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEE
VALVPVDHQLNLKAVAKCLGQKKLQMADAELAQKSSGYLVGGISPLAQKKQLPTLIDVSA
EEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCEEEECCC
QGFDRIYVSAGRRGLEISLAATDLAQLCKGKFADIKTL
CCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]