| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is fklB [H]
Identifier: 160876634
GI number: 160876634
Start: 4148027
End: 4148644
Strand: Reverse
Name: fklB [H]
Synonym: Sbal195_3528
Alternate gene names: 160876634
Gene position: 4148644-4148027 (Counterclockwise)
Preceding gene: 160876635
Following gene: 160876633
Centisome position: 77.58
GC content: 47.9
Gene sequence:
>618_bases ATGTCTGATAAATTCAGTACTGTTGAACAGCAAGCAAGCTACGGTGTAGGCCGTCAAATGGGTGAGCAACTGGCCGCCAA TTCTTTTGATGGTGTGGATATTCCAGCCGTTCAAGCGGGTTTAGCCGATGCATTCGCCGGTTTAGAAAGTGCTGTGTCTA TGCAAGATCTGCAAGTTGCGTTCACTGAAATCAGCGGTCGTATTCAAGCTGCTCAAGAGCAAGCTGCTGCAGCTGCGTCT GCTGAAGGCGATGCGTTCTTAGCTGAAAATGCTAAGCGTGATGGCGTGACTGTGACTGACTCTGGTCTGCAGTTCGAAGT ATTAGTCCAAGGTGACGGTGCTACTCCAACTTACGAAGATACAGTGCGTACTCACTACCATGGTTCTTTCATCAATGGTG ATGTGTTCGATAGCTCTGTAGTTCGTGGCCAACCAGCTGAGTTCCCAGTATCTGGCGTTATCGCTGGCTGGACTGAAGCA CTGCAACTGATGCCAGTAGGCACTAAGTTGAAATTATTTGTTCCACATCACCTAGCTTACGGTGAGCGTGGCGCGGGGGC ATCGATTCCTCCTTATTCAACTTTGGTATTCGAAGTTGAATTATTAGATATCATCTAA
Upstream 100 bases:
>100_bases GCCGCCTTAGTTAAATAAGCAGTCAGTTTATCAGCATAGCTCGCTGAACTATGGTAAACTGGCGCGCAAAATTCCACTGA TAAATTGAGAGTCGTTAATT
Downstream 100 bases:
>100_bases TATTGATAAAACGCCTAAGCCTGTCTTAGGCGTTTTCTTATGGAAGACAAAGAAAGATTGAGGAGATTGAAATGAGTGGA CAAGTGAGAGTGGCAATCGT
Product: FKBP-type peptidylprolyl isomerase
Products: NA
Alternate protein names: FKBP22; PPIase; Rotamase [H]
Number of amino acids: Translated: 205; Mature: 204
Protein sequence:
>205_residues MSDKFSTVEQQASYGVGRQMGEQLAANSFDGVDIPAVQAGLADAFAGLESAVSMQDLQVAFTEISGRIQAAQEQAAAAAS AEGDAFLAENAKRDGVTVTDSGLQFEVLVQGDGATPTYEDTVRTHYHGSFINGDVFDSSVVRGQPAEFPVSGVIAGWTEA LQLMPVGTKLKLFVPHHLAYGERGAGASIPPYSTLVFEVELLDII
Sequences:
>Translated_205_residues MSDKFSTVEQQASYGVGRQMGEQLAANSFDGVDIPAVQAGLADAFAGLESAVSMQDLQVAFTEISGRIQAAQEQAAAAAS AEGDAFLAENAKRDGVTVTDSGLQFEVLVQGDGATPTYEDTVRTHYHGSFINGDVFDSSVVRGQPAEFPVSGVIAGWTEA LQLMPVGTKLKLFVPHHLAYGERGAGASIPPYSTLVFEVELLDII >Mature_204_residues SDKFSTVEQQASYGVGRQMGEQLAANSFDGVDIPAVQAGLADAFAGLESAVSMQDLQVAFTEISGRIQAAQEQAAAAASA EGDAFLAENAKRDGVTVTDSGLQFEVLVQGDGATPTYEDTVRTHYHGSFINGDVFDSSVVRGQPAEFPVSGVIAGWTEAL QLMPVGTKLKLFVPHHLAYGERGAGASIPPYSTLVFEVELLDII
Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides [H]
COG id: COG0545
COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 1
Gene ontology:
Cell location: Cytoplasm. Periplasm. Note=According to PubMed:7610040 it is periplasmic [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PPIase FKBP-type domain [H]
Homologues:
Organism=Homo sapiens, GI17149836, Length=106, Percent_Identity=42.4528301886792, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI4503725, Length=106, Percent_Identity=42.4528301886792, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI206725530, Length=87, Percent_Identity=48.2758620689655, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI17149844, Length=87, Percent_Identity=48.2758620689655, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI17149842, Length=87, Percent_Identity=48.2758620689655, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI4758380, Length=106, Percent_Identity=39.622641509434, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI192448443, Length=87, Percent_Identity=40.2298850574713, Blast_Score=65, Evalue=3e-11, Organism=Escherichia coli, GI87082390, Length=201, Percent_Identity=57.2139303482587, Blast_Score=230, Evalue=5e-62, Organism=Escherichia coli, GI1789745, Length=210, Percent_Identity=38.5714285714286, Blast_Score=125, Evalue=2e-30, Organism=Caenorhabditis elegans, GI71993519, Length=106, Percent_Identity=43.3962264150943, Blast_Score=78, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17540882, Length=87, Percent_Identity=43.6781609195402, Blast_Score=74, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6324194, Length=110, Percent_Identity=44.5454545454545, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6320727, Length=88, Percent_Identity=51.1363636363636, Blast_Score=82, Evalue=4e-17, Organism=Drosophila melanogaster, GI281363946, Length=88, Percent_Identity=46.5909090909091, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI17352457, Length=88, Percent_Identity=46.5909090909091, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24655568, Length=106, Percent_Identity=41.5094339622642, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24583150, Length=106, Percent_Identity=37.7358490566038, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24647110, Length=114, Percent_Identity=40.3508771929825, Blast_Score=68, Evalue=4e-12,
Paralogues:
None
Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001179 - InterPro: IPR000774 [H]
Pfam domain/function: PF00254 FKBP_C; PF01346 FKBP_N [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 21571; Mature: 21440
Theoretical pI: Translated: 4.05; Mature: 4.05
Prosite motif: PS50059 FKBP_PPIASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDKFSTVEQQASYGVGRQMGEQLAANSFDGVDIPAVQAGLADAFAGLESAVSMQDLQVA CCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FTEISGRIQAAQEQAAAAASAEGDAFLAENAKRDGVTVTDSGLQFEVLVQGDGATPTYED HHHHHCHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCCEEEEEEECCCCCCCHHH TVRTHYHGSFINGDVFDSSVVRGQPAEFPVSGVIAGWTEALQLMPVGTKLKLFVPHHLAY HHHHEECCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHEECCCCEEEEEECHHHHC GERGAGASIPPYSTLVFEVELLDII CCCCCCCCCCCCEEEEEEEEEEECC >Mature Secondary Structure SDKFSTVEQQASYGVGRQMGEQLAANSFDGVDIPAVQAGLADAFAGLESAVSMQDLQVA CCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FTEISGRIQAAQEQAAAAASAEGDAFLAENAKRDGVTVTDSGLQFEVLVQGDGATPTYED HHHHHCHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCCEEEEEEECCCCCCCHHH TVRTHYHGSFINGDVFDSSVVRGQPAEFPVSGVIAGWTEALQLMPVGTKLKLFVPHHLAY HHHHEECCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHEECCCCEEEEEECHHHHC GERGAGASIPPYSTLVFEVELLDII CCCCCCCCCCCCEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 8703024; 9298646 [H]