| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is 160876629
Identifier: 160876629
GI number: 160876629
Start: 4140747
End: 4141520
Strand: Direct
Name: 160876629
Synonym: Sbal195_3523
Alternate gene names: NA
Gene position: 4140747-4141520 (Clockwise)
Preceding gene: 160876628
Following gene: 160876638
Centisome position: 77.44
GC content: 48.06
Gene sequence:
>774_bases ATGAAATTAGTCACAAACTTTTTGCTATCACTTATCCTCTGCTGCGCTTTCTCCCTGAGCGCACAGCCGCTAAACATCTA TACGGAAGAATGGTCACCGATCAGTTTTTCTGTTGATGGCAAACCTGCTGGTTTAGCAGTACAAGTCGTAGAAGAAATTC AAAAACGCATCAAGAGTCCAGATCCAATTAAAGTCGTACCTTGGGCTCGCGGCTGGAAAATGCTGACCGAGCAGCCCAAC ACTGTGTTGTTCACTATGACGCGCACTGCTGAAAGGGAACAGATGTTTACTATGATAGGACCCGTTGCTGTCGGCACGAC CAATTTTTATGCCTTAAAAAATAGCGGCATAAAAATTACCTCGATAGAAGATGCTAAAACGGCGAAGGCAATTGGCGTCT ATCGTGCCTCAGTGGAGGAGCGCTTGCTTACCGAACACGGCTTTACCAATGTCGCCGCCTCATCAACGCCCTTGTTAAGT GCGAAACAATTGATGAAGCACCGTATCGATCTTTGGTGTAATGCCAATCTCACTGCGCCAAGTATTTTGTCGGATGCGGG CGCCAGTATTGATGATGTAGAGTCCCTCTTCACGATTAGCGCTAATCATCTTTACATTGCCTTCTCACAAGGCACGCCCA ATGAGGTGATCGAGCAGTGGAAAAATGCTCTAGAAGCGCTAAAAGCGGATGGCACCTTCGCGACGATTTACCATACTTGG CTCCCCAACGATGCGCCGCCAATGCAGACCGAACGTATCGGGCTGGGCAACTAA
Upstream 100 bases:
>100_bases ACCCCTAGCTATACTTGATTTGAACACAGCGTTCATCTTTAATCGTTTTAAGAGCAAGCAGTGAGACTCAATTATAACGT TCTAATCTTTAGGGTTATTA
Downstream 100 bases:
>100_bases ACCTATTGCGCTACGTTCTACGTTTTAAGGGCTAAGTTTTGATTTCTAAGTGCTAAGCACAAAACTCTATAACTCTTTAG CAAGCTCTTAGAAAGGACAC
Product: extracellular solute-binding protein, family 3
Products: NA
Alternate protein names: ABC-Type Amino Acid Transport/Signal Transduction Systems; ABC-Type Amino Acid Transporter; Periplasmic Protein; Amino Acid ABC Transporter; ABC Amino Acid Transporter Periplasmic Protein; Cache Sensor Protein
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MKLVTNFLLSLILCCAFSLSAQPLNIYTEEWSPISFSVDGKPAGLAVQVVEEIQKRIKSPDPIKVVPWARGWKMLTEQPN TVLFTMTRTAEREQMFTMIGPVAVGTTNFYALKNSGIKITSIEDAKTAKAIGVYRASVEERLLTEHGFTNVAASSTPLLS AKQLMKHRIDLWCNANLTAPSILSDAGASIDDVESLFTISANHLYIAFSQGTPNEVIEQWKNALEALKADGTFATIYHTW LPNDAPPMQTERIGLGN
Sequences:
>Translated_257_residues MKLVTNFLLSLILCCAFSLSAQPLNIYTEEWSPISFSVDGKPAGLAVQVVEEIQKRIKSPDPIKVVPWARGWKMLTEQPN TVLFTMTRTAEREQMFTMIGPVAVGTTNFYALKNSGIKITSIEDAKTAKAIGVYRASVEERLLTEHGFTNVAASSTPLLS AKQLMKHRIDLWCNANLTAPSILSDAGASIDDVESLFTISANHLYIAFSQGTPNEVIEQWKNALEALKADGTFATIYHTW LPNDAPPMQTERIGLGN >Mature_257_residues MKLVTNFLLSLILCCAFSLSAQPLNIYTEEWSPISFSVDGKPAGLAVQVVEEIQKRIKSPDPIKVVPWARGWKMLTEQPN TVLFTMTRTAEREQMFTMIGPVAVGTTNFYALKNSGIKITSIEDAKTAKAIGVYRASVEERLLTEHGFTNVAASSTPLLS AKQLMKHRIDLWCNANLTAPSILSDAGASIDDVESLFTISANHLYIAFSQGTPNEVIEQWKNALEALKADGTFATIYHTW LPNDAPPMQTERIGLGN
Specific function: Unknown
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28276; Mature: 28276
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLVTNFLLSLILCCAFSLSAQPLNIYTEEWSPISFSVDGKPAGLAVQVVEEIQKRIKSP CHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC DPIKVVPWARGWKMLTEQPNTVLFTMTRTAEREQMFTMIGPVAVGTTNFYALKNSGIKIT CCEEEECCCCCCCHHHCCCCEEEEEEECCCHHHHHHHHHCCEEECCCEEEEEECCCEEEE SIEDAKTAKAIGVYRASVEERLLTEHGFTNVAASSTPLLSAKQLMKHRIDLWCNANLTAP ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCEEECCCCCCC SILSDAGASIDDVESLFTISANHLYIAFSQGTPNEVIEQWKNALEALKADGTFATIYHTW HHHHHCCCCHHHHHHHHEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEE LPNDAPPMQTERIGLGN CCCCCCCCCCCCCCCCC >Mature Secondary Structure MKLVTNFLLSLILCCAFSLSAQPLNIYTEEWSPISFSVDGKPAGLAVQVVEEIQKRIKSP CHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC DPIKVVPWARGWKMLTEQPNTVLFTMTRTAEREQMFTMIGPVAVGTTNFYALKNSGIKIT CCEEEECCCCCCCHHHCCCCEEEEEEECCCHHHHHHHHHCCEEECCCEEEEEECCCEEEE SIEDAKTAKAIGVYRASVEERLLTEHGFTNVAASSTPLLSAKQLMKHRIDLWCNANLTAP ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCEEECCCCCCC SILSDAGASIDDVESLFTISANHLYIAFSQGTPNEVIEQWKNALEALKADGTFATIYHTW HHHHHCCCCHHHHHHHHEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEE LPNDAPPMQTERIGLGN CCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA