Click here to switch to the map view.

The map label for this gene is ymfK [C]

Identifier: 160876505

GI number: 160876505

Start: 4017577

End: 4018242

Strand: Direct

Name: ymfK [C]

Synonym: Sbal195_3399

Alternate gene names: 160876505

Gene position: 4017577-4018242 (Clockwise)

Preceding gene: 160876493

Following gene: 160876506

Centisome position: 75.13

GC content: 42.79

Gene sequence:

>666_bases
ATGAAAATAAGTTGGATTGATCTGGTTAAAACCAGAATGAAAGAGGCTGGGGTAACTCAGTCAATGCTTGCTGAAAAGAT
GGGAATGTCTCAGGGCGCCATCGCTCACTGGTTAGGTGGGAAAAGAAAGCCAAGCATTGAAGACATTGCATCCATGATGA
ATATCGTGGGGATTCGTCACATGACTTTAGGGGCTGATGGACTGATTGATTACCCTGATTCTGTGTTAGGTAACACTGAG
GAATTACCAGCGAAGATATCCTATGTAAATTCATTCCCAGTTATCAGTTATGTCCAAGCTGGCGCTTGGACTGAAGCTGT
TGAATCCTGTCCAGCCTCTGCATTGGATGAATGGCAAGACACCACAGAGCGCACGAGCGAAAACTGTTTTTGGCTACGCG
TTCAAGGTGACTCTATGACGACACCGGCAGGCATTAGTTTTCCTGAAGGCACGCTTATTTTAATTGATGCGGAAAAAGAC
TATCAAAATGGCTCATTCGTTGTTGCTAAGCTAACTGATATCAACGAAGCGACCTTTAAAAAACTAGTGATAGATGCAGG
GCAAAAGTTTCTACGGCCATTGAATACTGCTTATCCAACTCTGCCAATCAATGGTAACTGTAAAATAATAGGCGTCGTTG
TAGACGCAAAAATGAAAATTTTTTGA

Upstream 100 bases:

>100_bases
TTGCCTTTAACACGGATATTACACAATGAAATATTAAACAGCAAACACTTATTACAAAATGGATATTCTGAAATCAATTA
CAATAGGTAATAATTGCTAT

Downstream 100 bases:

>100_bases
CTCTACTAGCAAGCACAAACCGGACACTTTAGTTGAGAGCTTTCAAGCTCTTCAGGTGACAAGGCACTGTTAGCCAAATG
AAGTCGTTCCGAGTTGCAGT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MKISWIDLVKTRMKEAGVTQSMLAEKMGMSQGAIAHWLGGKRKPSIEDIASMMNIVGIRHMTLGADGLIDYPDSVLGNTE
ELPAKISYVNSFPVISYVQAGAWTEAVESCPASALDEWQDTTERTSENCFWLRVQGDSMTTPAGISFPEGTLILIDAEKD
YQNGSFVVAKLTDINEATFKKLVIDAGQKFLRPLNTAYPTLPINGNCKIIGVVVDAKMKIF

Sequences:

>Translated_221_residues
MKISWIDLVKTRMKEAGVTQSMLAEKMGMSQGAIAHWLGGKRKPSIEDIASMMNIVGIRHMTLGADGLIDYPDSVLGNTE
ELPAKISYVNSFPVISYVQAGAWTEAVESCPASALDEWQDTTERTSENCFWLRVQGDSMTTPAGISFPEGTLILIDAEKD
YQNGSFVVAKLTDINEATFKKLVIDAGQKFLRPLNTAYPTLPINGNCKIIGVVVDAKMKIF
>Mature_221_residues
MKISWIDLVKTRMKEAGVTQSMLAEKMGMSQGAIAHWLGGKRKPSIEDIASMMNIVGIRHMTLGADGLIDYPDSVLGNTE
ELPAKISYVNSFPVISYVQAGAWTEAVESCPASALDEWQDTTERTSENCFWLRVQGDSMTTPAGISFPEGTLILIDAEKD
YQNGSFVVAKLTDINEATFKKLVIDAGQKFLRPLNTAYPTLPINGNCKIIGVVVDAKMKIF

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787391, Length=124, Percent_Identity=39.5161290322581, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 24211; Mature: 24211

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISWIDLVKTRMKEAGVTQSMLAEKMGMSQGAIAHWLGGKRKPSIEDIASMMNIVGIRH
CCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH
MTLGADGLIDYPDSVLGNTEELPAKISYVNSFPVISYVQAGAWTEAVESCPASALDEWQD
EEECCCCCCCCCHHHCCCCHHCCCEEEECCCCCHHHHHHHCCHHHHHHHCCHHHHHHHHH
TTERTSENCFWLRVQGDSMTTPAGISFPEGTLILIDAEKDYQNGSFVVAKLTDINEATFK
HHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHH
KLVIDAGQKFLRPLNTAYPTLPINGNCKIIGVVVDAKMKIF
HHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEEECCEEECC
>Mature Secondary Structure
MKISWIDLVKTRMKEAGVTQSMLAEKMGMSQGAIAHWLGGKRKPSIEDIASMMNIVGIRH
CCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH
MTLGADGLIDYPDSVLGNTEELPAKISYVNSFPVISYVQAGAWTEAVESCPASALDEWQD
EEECCCCCCCCCHHHCCCCHHCCCEEEECCCCCHHHHHHHCCHHHHHHHCCHHHHHHHHH
TTERTSENCFWLRVQGDSMTTPAGISFPEGTLILIDAEKDYQNGSFVVAKLTDINEATFK
HHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHH
KLVIDAGQKFLRPLNTAYPTLPINGNCKIIGVVVDAKMKIF
HHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]