| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is serB [H]
Identifier: 160876467
GI number: 160876467
Start: 3969376
End: 3970356
Strand: Reverse
Name: serB [H]
Synonym: Sbal195_3361
Alternate gene names: 160876467
Gene position: 3970356-3969376 (Counterclockwise)
Preceding gene: 160876469
Following gene: 160876466
Centisome position: 74.25
GC content: 50.36
Gene sequence:
>981_bases ATGGAAAGCTTGAACCAAGATGCGCTTTTTTTGTGGTTAGTCTCTGACCATTCCCCAAGGTTTGAACGCCAAGGGCAAGT GTTTGAACGTTATCAAGAGTCAGCAAACCGCGCTGGTGTTTCGCGTTTGCGGATTATCTATCAAGATACGTTAGCGCAGG CAGCGATATCGGCCTGGATTGCGGCATTGCCTTCGTCTGACGTTATCGGTATTGCCCATATCAAACGCCAAGTTGGCTTA CATTGTATCGAGTTGGCGCTGGTGAATGTGCCTTCTCAGGCACAGTTAGCGGCGTTCCCTCAGTCTTTGGCTGAACTGCA TGTGCTCCATGTTGATTTGCCTCGCTTGAATCATCCCGGCTTATTAGTGATGGACATGGATTCCACGGCGATTCAGATTG AATGTATTGATGAATTAGCGGCCATGGCGGGTGTTGGCGAGCGCGTGGCGGCGATTACTGAACGTGCTATGCAAGGTGAG CTAGATTTTGAGCAGAGTCTGCGTCAGCGCGTGGCACAGCTTAAGGGCGCCGATGCCAGTATTATCACGACCTTGTGCGA CAACTTGCCTTTAATGCCTGGGCTTGAGTCCATACTGTTAGAACTTAAATCCCATGACTGGCGTTTAGTGGTGGCATCTG GCGGCTTTACGCCTTTTGTGGGTCATTTAAAACAGCTTCTAAGCTTAGATGCGGCCTTTGCTAATGAGTTAGTCATCACT GATGGCAAACTCGCGGGTGAAGTGACCGGTAAAGTCGTGGATGCGCAGTTTAAAGCGGATGTGGTTGAGCGTTGCAGTGA GCAGTGGGACATTCAAAAAGGTCAAAGCGTCGCTATCGGCGATGGCGCGAATGATATCCCTATGGTGATGGCGGCGGATT TTGGTATCGCTTTCCATGCCAAACCTAAGCTGGCAGCCGCGGCGGATGCCAATATTCGCCATCTTGACCTGCGCGTTTTA CCTTATCTGTTGCAAATCTAG
Upstream 100 bases:
>100_bases TAGCCCTTTAAGATATAACACTTTGACCCTTAAAATGTAGAGCGCTTGCCTAATCATAATTGATTCTGAGTGAGCCCGAT AGTTGGAGAATTTAAGTCCG
Downstream 100 bases:
>100_bases GTTATTCATTTATTTGAAATTTGAGTCGAGATGAAAGTCTAAGTAAGGGCTGAGTTAGAGTAATGACTCTTGTCTTTTAT CGATGAACTGGTAGTTTAGG
Product: phosphoserine phosphatase SerB
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MESLNQDALFLWLVSDHSPRFERQGQVFERYQESANRAGVSRLRIIYQDTLAQAAISAWIAALPSSDVIGIAHIKRQVGL HCIELALVNVPSQAQLAAFPQSLAELHVLHVDLPRLNHPGLLVMDMDSTAIQIECIDELAAMAGVGERVAAITERAMQGE LDFEQSLRQRVAQLKGADASIITTLCDNLPLMPGLESILLELKSHDWRLVVASGGFTPFVGHLKQLLSLDAAFANELVIT DGKLAGEVTGKVVDAQFKADVVERCSEQWDIQKGQSVAIGDGANDIPMVMAADFGIAFHAKPKLAAAADANIRHLDLRVL PYLLQI
Sequences:
>Translated_326_residues MESLNQDALFLWLVSDHSPRFERQGQVFERYQESANRAGVSRLRIIYQDTLAQAAISAWIAALPSSDVIGIAHIKRQVGL HCIELALVNVPSQAQLAAFPQSLAELHVLHVDLPRLNHPGLLVMDMDSTAIQIECIDELAAMAGVGERVAAITERAMQGE LDFEQSLRQRVAQLKGADASIITTLCDNLPLMPGLESILLELKSHDWRLVVASGGFTPFVGHLKQLLSLDAAFANELVIT DGKLAGEVTGKVVDAQFKADVVERCSEQWDIQKGQSVAIGDGANDIPMVMAADFGIAFHAKPKLAAAADANIRHLDLRVL PYLLQI >Mature_326_residues MESLNQDALFLWLVSDHSPRFERQGQVFERYQESANRAGVSRLRIIYQDTLAQAAISAWIAALPSSDVIGIAHIKRQVGL HCIELALVNVPSQAQLAAFPQSLAELHVLHVDLPRLNHPGLLVMDMDSTAIQIECIDELAAMAGVGERVAAITERAMQGE LDFEQSLRQRVAQLKGADASIITTLCDNLPLMPGLESILLELKSHDWRLVVASGGFTPFVGHLKQLLSLDAAFANELVIT DGKLAGEVTGKVVDAQFKADVVERCSEQWDIQKGQSVAIGDGANDIPMVMAADFGIAFHAKPKLAAAADANIRHLDLRVL PYLLQI
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=197, Percent_Identity=31.4720812182741, Blast_Score=84, Evalue=1e-16, Organism=Escherichia coli, GI1790849, Length=205, Percent_Identity=59.0243902439024, Blast_Score=251, Evalue=5e-68, Organism=Caenorhabditis elegans, GI115534456, Length=186, Percent_Identity=29.5698924731183, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115534454, Length=186, Percent_Identity=29.5698924731183, Blast_Score=65, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6321647, Length=222, Percent_Identity=40.0900900900901, Blast_Score=144, Evalue=3e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 35492; Mature: 35492
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESLNQDALFLWLVSDHSPRFERQGQVFERYQESANRAGVSRLRIIYQDTLAQAAISAWI CCCCCCCEEEEEEEECCCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH AALPSSDVIGIAHIKRQVGLHCIELALVNVPSQAQLAAFPQSLAELHVLHVDLPRLNHPG HHCCCCCCCHHHHHHHHHCHHEEEHHHCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCC LLVMDMDSTAIQIECIDELAAMAGVGERVAAITERAMQGELDFEQSLRQRVAQLKGADAS EEEEECCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH IITTLCDNLPLMPGLESILLELKSHDWRLVVASGGFTPFVGHLKQLLSLDAAFANELVIT HHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEE DGKLAGEVTGKVVDAQFKADVVERCSEQWDIQKGQSVAIGDGANDIPMVMAADFGIAFHA CCCCCCHHHCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEECCCEEEEC KPKLAAAADANIRHLDLRVLPYLLQI CCCEEECCCCCCEEEHHHHHHHHHCC >Mature Secondary Structure MESLNQDALFLWLVSDHSPRFERQGQVFERYQESANRAGVSRLRIIYQDTLAQAAISAWI CCCCCCCEEEEEEEECCCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH AALPSSDVIGIAHIKRQVGLHCIELALVNVPSQAQLAAFPQSLAELHVLHVDLPRLNHPG HHCCCCCCCHHHHHHHHHCHHEEEHHHCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCC LLVMDMDSTAIQIECIDELAAMAGVGERVAAITERAMQGELDFEQSLRQRVAQLKGADAS EEEEECCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH IITTLCDNLPLMPGLESILLELKSHDWRLVVASGGFTPFVGHLKQLLSLDAAFANELVIT HHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEE DGKLAGEVTGKVVDAQFKADVVERCSEQWDIQKGQSVAIGDGANDIPMVMAADFGIAFHA CCCCCCHHHCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEECCCEEEEC KPKLAAAADANIRHLDLRVLPYLLQI CCCEEECCCCCCEEEHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]