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The map label for this gene is yciR [C]

Identifier: 160876440

GI number: 160876440

Start: 3932089

End: 3933582

Strand: Reverse

Name: yciR [C]

Synonym: Sbal195_3334

Alternate gene names: 160876440

Gene position: 3933582-3932089 (Counterclockwise)

Preceding gene: 160876441

Following gene: 160876438

Centisome position: 73.56

GC content: 45.25

Gene sequence:

>1494_bases
ATGTTCGAAATCGGGTTAGTTGTTGCTTCTCTCATTTTATTGATATTTTCATTATATATACTGCAGGCAAAATATAGATC
GCAACGGTCACAGCAAAAATTCTTAGCTCAACTTTGTCTCCAGCTAGAGCAACAAAAGGTTGAGCGCCAAGCATTAAACC
TTGGCACGGTTCCCCAAGAGTTTGCGCCTCTCTACCATACCTTAGATGAATTATTGAAGGCCTTACCCGCAAGCGCAGGT
AAAGACAAGTTGACTGGACTAGTGAATCGCGTCGGCCTTAAACGTACGCTGACCTCCATGATGCCGCTGACTCAAGGGAC
ATTAGTGCTGATTGATATTTATCGATTTCGCTATGTGAATGATCTCTTTGGGTTTGTGTTTGGCGATATCCTGCTAAAGC
AATTTGCGGAACGGATAAACACCTTAAGTTTATCCCCAAGGTTAATCGCACGGCTCAATGGTGATGAATTTTGCCTATAT
TACGAGCAAGCGTTGACGGAGGAGCAATTAGTCCATTTAAGAGGCCGTTTGCAGGTGCCTTTTAGCATTAAGAACACGCC
AGTCAGCGTTAAACTTCAAATCGGCTGTGTGCATTTACAAGAACACCACGCCGATACGAGCCAGATGTTACGTCGCGTCG
ATTTGGCGCTGAAGAAAGCCCGTCACTCTCGTAGCGCGATTGCTTACTATGCCGAGAATGATGATATTCAACAGTTAAGA
GAACTGAGAATTATCGATAGCTTGCCTAAAGGTTTGCAACGCAATCAAGTGTATATGGTGTATCAAGCGAAACAGGATAT
TGCGACGGGAAGGTGTTTTCAGGTTGAAGCCTTGATGCGCTGGGAACACGACGAACTTGGGGTTATTTCTCCAGGTGAGT
TTATCCCTTTAGCCGAATATGCCGGCATGATTGATTTAGTGAGCCAATGGGCACTCGATCAGGTTTTAGCGCAGCAGGAA
AAATGGCGCGCCGCAGGGATACAATTGTGCGTCGCAGTCAACCTATCTACACGGGATCTCGACAGTGAAACCTTGCCCCA
AGAAATTGCGGCGAGATTGGCGCATTACAAGCTTCCGCCCGAATCCTTAATGATTGAAATTACGGAAAGTACCTTAATGG
CGGATTTAACTAAGGCGGTCGAAACCTTAGATAAAATTCGTGCTTTAGGGGTGAGGCTCGCAATTGATGATTTTGGTACC
GGTCATTCTTCACTGGCTTACTTGAAGCATCTACCCGTCAATGAAGTCAAAATCGATAAAGCTTTTCTAAAGGATCTTGA
GCAGGATAAACCGTCGGAATATATCCTCGAAGCCAGTATTAATATTGCTAAAAAACTCGGTTATGAGGTGACTGTCGAAG
GGATTGAAACCCCTGAAATTAGAGAGATACTCGTCGCTATGGGCGTCGATACCCTACAAGGCATGTATTACGCTAAGCCC
ATGAGAGCTGCAGAACTGGAAATGAACTGGGCCCGGCTGCACAATGCCATGTAA

Upstream 100 bases:

>100_bases
CCAATAATCGTTAGGCCTAAATGGAACTCAAATGGCACGTGAACACTGAATTGCAGTGCCATTCGATAAAAAGCTTACGC
GGTAAAGCAGAGGCCAAGGT

Downstream 100 bases:

>100_bases
ACCCAATGCCATCTAAATCTAATGCTCATTAACCCCTGTGCTAATTTGATTAAGGGCCACTTAAATTTAGTGCACTTAAA
ATTAGGGCCACTTAAATTAA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MFEIGLVVASLILLIFSLYILQAKYRSQRSQQKFLAQLCLQLEQQKVERQALNLGTVPQEFAPLYHTLDELLKALPASAG
KDKLTGLVNRVGLKRTLTSMMPLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQFAERINTLSLSPRLIARLNGDEFCLY
YEQALTEEQLVHLRGRLQVPFSIKNTPVSVKLQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLR
ELRIIDSLPKGLQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEYAGMIDLVSQWALDQVLAQQE
KWRAAGIQLCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITESTLMADLTKAVETLDKIRALGVRLAIDDFGT
GHSSLAYLKHLPVNEVKIDKAFLKDLEQDKPSEYILEASINIAKKLGYEVTVEGIETPEIREILVAMGVDTLQGMYYAKP
MRAAELEMNWARLHNAM

Sequences:

>Translated_497_residues
MFEIGLVVASLILLIFSLYILQAKYRSQRSQQKFLAQLCLQLEQQKVERQALNLGTVPQEFAPLYHTLDELLKALPASAG
KDKLTGLVNRVGLKRTLTSMMPLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQFAERINTLSLSPRLIARLNGDEFCLY
YEQALTEEQLVHLRGRLQVPFSIKNTPVSVKLQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLR
ELRIIDSLPKGLQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEYAGMIDLVSQWALDQVLAQQE
KWRAAGIQLCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITESTLMADLTKAVETLDKIRALGVRLAIDDFGT
GHSSLAYLKHLPVNEVKIDKAFLKDLEQDKPSEYILEASINIAKKLGYEVTVEGIETPEIREILVAMGVDTLQGMYYAKP
MRAAELEMNWARLHNAM
>Mature_497_residues
MFEIGLVVASLILLIFSLYILQAKYRSQRSQQKFLAQLCLQLEQQKVERQALNLGTVPQEFAPLYHTLDELLKALPASAG
KDKLTGLVNRVGLKRTLTSMMPLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQFAERINTLSLSPRLIARLNGDEFCLY
YEQALTEEQLVHLRGRLQVPFSIKNTPVSVKLQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLR
ELRIIDSLPKGLQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEYAGMIDLVSQWALDQVLAQQE
KWRAAGIQLCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITESTLMADLTKAVETLDKIRALGVRLAIDDFGT
GHSSLAYLKHLPVNEVKIDKAFLKDLEQDKPSEYILEASINIAKKLGYEVTVEGIETPEIREILVAMGVDTLQGMYYAKP
MRAAELEMNWARLHNAM

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=421, Percent_Identity=30.166270783848, Blast_Score=202, Evalue=4e-53,
Organism=Escherichia coli, GI87081921, Length=419, Percent_Identity=29.3556085918854, Blast_Score=171, Evalue=1e-43,
Organism=Escherichia coli, GI1790496, Length=243, Percent_Identity=35.3909465020576, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI87081743, Length=260, Percent_Identity=32.6923076923077, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI226510982, Length=425, Percent_Identity=26.5882352941176, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1788849, Length=245, Percent_Identity=29.7959183673469, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1788502, Length=234, Percent_Identity=31.1965811965812, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=29.1139240506329, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=30.7053941908714, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87081980, Length=233, Percent_Identity=30.4721030042918, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1787055, Length=274, Percent_Identity=25.5474452554745, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082096, Length=216, Percent_Identity=29.1666666666667, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=423, Percent_Identity=22.9314420803783, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787410, Length=152, Percent_Identity=28.2894736842105, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=30, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 56398; Mature: 56398

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEIGLVVASLILLIFSLYILQAKYRSQRSQQKFLAQLCLQLEQQKVERQALNLGTVPQE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
FAPLYHTLDELLKALPASAGKDKLTGLVNRVGLKRTLTSMMPLTQGTLVLIDIYRFRYVN
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHH
DLFGFVFGDILLKQFAERINTLSLSPRLIARLNGDEFCLYYEQALTEEQLVHLRGRLQVP
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCEEEEHHHHCCHHHHHHHHCCEEEC
FSIKNTPVSVKLQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLR
EEECCCCEEEEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
ELRIIDSLPKGLQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEY
HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEHHHHHHCCCCCCCCCCCCCCCCHHHH
AGMIDLVSQWALDQVLAQQEKWRAAGIQLCVAVNLSTRDLDSETLPQEIAARLAHYKLPP
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
ESLMIEITESTLMADLTKAVETLDKIRALGVRLAIDDFGTGHSSLAYLKHLPVNEVKIDK
HHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCHHHHHH
AFLKDLEQDKPSEYILEASINIAKKLGYEVTVEGIETPEIREILVAMGVDTLQGMYYAKP
HHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCHHHHCCHHHHCC
MRAAELEMNWARLHNAM
CCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFEIGLVVASLILLIFSLYILQAKYRSQRSQQKFLAQLCLQLEQQKVERQALNLGTVPQE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
FAPLYHTLDELLKALPASAGKDKLTGLVNRVGLKRTLTSMMPLTQGTLVLIDIYRFRYVN
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHH
DLFGFVFGDILLKQFAERINTLSLSPRLIARLNGDEFCLYYEQALTEEQLVHLRGRLQVP
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCEEEEHHHHCCHHHHHHHHCCEEEC
FSIKNTPVSVKLQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLR
EEECCCCEEEEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
ELRIIDSLPKGLQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEY
HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEHHHHHHCCCCCCCCCCCCCCCCHHHH
AGMIDLVSQWALDQVLAQQEKWRAAGIQLCVAVNLSTRDLDSETLPQEIAARLAHYKLPP
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
ESLMIEITESTLMADLTKAVETLDKIRALGVRLAIDDFGTGHSSLAYLKHLPVNEVKIDK
HHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCHHHHHH
AFLKDLEQDKPSEYILEASINIAKKLGYEVTVEGIETPEIREILVAMGVDTLQGMYYAKP
HHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCHHHHCCHHHHCC
MRAAELEMNWARLHNAM
CCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]