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The map label for this gene is ybhD [H]

Identifier: 160876433

GI number: 160876433

Start: 3924930

End: 3925817

Strand: Reverse

Name: ybhD [H]

Synonym: Sbal195_3327

Alternate gene names: 160876433

Gene position: 3925817-3924930 (Counterclockwise)

Preceding gene: 160876436

Following gene: 160876431

Centisome position: 73.42

GC content: 42.91

Gene sequence:

>888_bases
ATGTTTAGTCTCGAACAACTCGAAGCCTTTATGGAAACCGTAGAATCTGGTTCATTTTCGAATGCCGCAAGGCAACTTAA
GAAAGCACAGTCCGTGATTAGCCAGCATGTGATGAATCTTGAAATTGACTGTGGTGTTGAGTTATTTGACCGTTCGGGTC
GTTATCCGGTATTAACGGCCGAAGGCAGTAAATTACTGCCCTACGCAAGAGCGACGATTCTTCAACATAAAAGACTTAAA
CATACCGCCTTATCGCTTTTTAGTCGTCAATCTTCAGAAGTGTGCCTTGCGATGGATGAAGGCATTCCTATACAGAGAAT
ATCGGAAATTATTCAGTTGTTAGAAAGTGATTTCCCTAACATCGAACTCGAGTTTCTCAGTGCCTCAAGCATAGATATTA
TCGACATGGTACATTCTGGAAGAGCATCTACAGGACTGATTTTTAGCGAATTATCTATGCCAAGTAGTATAGATTTTGAG
AGTATTGGTGTGATTGAATTCGATCTTTATGTGGCGAGTTCGCATCCCTTAGCGAAATCAGTTGCACCGAACATGGACTC
ATTGCGACTGTATCGACAATTATGCATCCGCTCACGTAATACTAAAACCAGCAGTTTTCAGCAGGCGTTCAGTCCTGATG
TTTGGTATGCCGATAACTATTATGTGTTATTGGAGCTCGCATTACAGGGCCATGGTTGGTGTCTGTTACCAGAGCACATG
GCATCCAGCTCAGTTTTATCGGGCAACTTGACTCGGGTCCCTATAGAGTTTGAGCAGATAGGCTGGTATGCAAACGTCGA
TGTGATCCAGCATCAAGATAAAAGCAGCCTGCCATTATTGAAACGACTCAGACAACTGTTTAGAGAACTCTTGGTTGTGC
AGAAGTAA

Upstream 100 bases:

>100_bases
TCGTTTTCATGGCTATTTCCCATTCATTCAATGTGACTATGGCCATAATTTTATCTAGTATAGGGATAACTAATAGTTAG
ATAGTATCGGTAAAAGCGAT

Downstream 100 bases:

>100_bases
ATGGTTGGACAGAAATAAAGCAAAGCATAAATAAAACCCCAGTTAAGTGAGAACTCAACTGGGGTTTATTGTTTGTGCGC
ATCAGGATTTGTGCATTAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MFSLEQLEAFMETVESGSFSNAARQLKKAQSVISQHVMNLEIDCGVELFDRSGRYPVLTAEGSKLLPYARATILQHKRLK
HTALSLFSRQSSEVCLAMDEGIPIQRISEIIQLLESDFPNIELEFLSASSIDIIDMVHSGRASTGLIFSELSMPSSIDFE
SIGVIEFDLYVASSHPLAKSVAPNMDSLRLYRQLCIRSRNTKTSSFQQAFSPDVWYADNYYVLLELALQGHGWCLLPEHM
ASSSVLSGNLTRVPIEFEQIGWYANVDVIQHQDKSSLPLLKRLRQLFRELLVVQK

Sequences:

>Translated_295_residues
MFSLEQLEAFMETVESGSFSNAARQLKKAQSVISQHVMNLEIDCGVELFDRSGRYPVLTAEGSKLLPYARATILQHKRLK
HTALSLFSRQSSEVCLAMDEGIPIQRISEIIQLLESDFPNIELEFLSASSIDIIDMVHSGRASTGLIFSELSMPSSIDFE
SIGVIEFDLYVASSHPLAKSVAPNMDSLRLYRQLCIRSRNTKTSSFQQAFSPDVWYADNYYVLLELALQGHGWCLLPEHM
ASSSVLSGNLTRVPIEFEQIGWYANVDVIQHQDKSSLPLLKRLRQLFRELLVVQK
>Mature_295_residues
MFSLEQLEAFMETVESGSFSNAARQLKKAQSVISQHVMNLEIDCGVELFDRSGRYPVLTAEGSKLLPYARATILQHKRLK
HTALSLFSRQSSEVCLAMDEGIPIQRISEIIQLLESDFPNIELEFLSASSIDIIDMVHSGRASTGLIFSELSMPSSIDFE
SIGVIEFDLYVASSHPLAKSVAPNMDSLRLYRQLCIRSRNTKTSSFQQAFSPDVWYADNYYVLLELALQGHGWCLLPEHM
ASSSVLSGNLTRVPIEFEQIGWYANVDVIQHQDKSSLPLLKRLRQLFRELLVVQK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=218, Percent_Identity=26.605504587156, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI87082024, Length=260, Percent_Identity=25.7692307692308, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787949, Length=205, Percent_Identity=25.8536585365854, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=179, Percent_Identity=27.9329608938547, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33264; Mature: 33264

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSLEQLEAFMETVESGSFSNAARQLKKAQSVISQHVMNLEIDCGVELFDRSGRYPVLTA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHCCCCCCEEEEC
EGSKLLPYARATILQHKRLKHTALSLFSRQSSEVCLAMDEGIPIQRISEIIQLLESDFPN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCC
IELEFLSASSIDIIDMVHSGRASTGLIFSELSMPSSIDFESIGVIEFDLYVASSHPLAKS
EEEEEECCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHH
VAPNMDSLRLYRQLCIRSRNTKTSSFQQAFSPDVWYADNYYVLLELALQGHGWCLLPEHM
HCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCEEEEEEEEECCCCEEEEHHHH
ASSSVLSGNLTRVPIEFEQIGWYANVDVIQHQDKSSLPLLKRLRQLFRELLVVQK
CCCHHHCCCCEECCEEHHHCCCEECCHHEECCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFSLEQLEAFMETVESGSFSNAARQLKKAQSVISQHVMNLEIDCGVELFDRSGRYPVLTA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHCCCCCCEEEEC
EGSKLLPYARATILQHKRLKHTALSLFSRQSSEVCLAMDEGIPIQRISEIIQLLESDFPN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCC
IELEFLSASSIDIIDMVHSGRASTGLIFSELSMPSSIDFESIGVIEFDLYVASSHPLAKS
EEEEEECCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHH
VAPNMDSLRLYRQLCIRSRNTKTSSFQQAFSPDVWYADNYYVLLELALQGHGWCLLPEHM
HCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCEEEEEEEEECCCCEEEEHHHH
ASSSVLSGNLTRVPIEFEQIGWYANVDVIQHQDKSSLPLLKRLRQLFRELLVVQK
CCCHHHCCCCEECCEEHHHCCCEECCHHEECCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]