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The map label for this gene is ycfQ [H]

Identifier: 160876432

GI number: 160876432

Start: 3924197

End: 3924820

Strand: Direct

Name: ycfQ [H]

Synonym: Sbal195_3326

Alternate gene names: 160876432

Gene position: 3924197-3924820 (Clockwise)

Preceding gene: 160876425

Following gene: 160876434

Centisome position: 73.39

GC content: 50.8

Gene sequence:

>624_bases
ATGATGTCAACCGTCACCCAGACGCCCTGTGTAGGTCGCCCACGAGCCTTCGACACTGACGATGCATTAGCCAAAGCCTT
AGAAGTCTTCTGGCGCAAAGGTTTTGAAGGTACATCGTTAACCGATTTAACCCAAGCTATGGGCATTAATAAGCCAAGCC
TTTATGCCGCCTTCGGCAATAAAGAACAGTTATTTCTCAAAGCGATAGAATTATATGAACAACGCCCCTGTGCGTTTTTC
TATCCCGCGCTGGAGCAAAAAACCGCCTATTTAGTGGTCGAGTCAATGCTGCTCGGGGCCGCGAGCTCCTTGGTGGATAA
AAGCCATCCGCAGGGATGTTTGATTGTTCAAGGGGCATTAACCTGCAGTGAAGCAGGGCAAGCGATTAAAGACACTTTGA
TTAATCGTCGCCGCGACGGTGAAATCGCTCTGTGCGAAAGATTGCAACGCGCCAAAGATGAAGGGGATTTGCCCGCAGAT
GCCGAGCCGTTACTGCTTGCCCGTTATGTCGGCACAGTATTGCAAGGCATGGCCGTACAAGCGACCAGTGGGATTTGCCC
GAATGAATTACGCAAAGTCGCCGAGCTAGTGCTCGCTAACTTTCCGCGCAATGATGAGTCCTGA

Upstream 100 bases:

>100_bases
AGTAGACAAATCCCCTTAGTCGGTCATCAGTCAGCAAGTGTGGCTGGACATGGACTAAACCCATGTCTATCCTAGGGGCA
ATTGAGAATTGAGGAGCCTA

Downstream 100 bases:

>100_bases
TCCATAAATCCTAATGCACAAATCCTGATGCGCACAAACAATAAACCCCAGTTGAGTTCTCACTTAACTGGGGTTTTATT
TATGCTTTGCTTTATTTCTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MMSTVTQTPCVGRPRAFDTDDALAKALEVFWRKGFEGTSLTDLTQAMGINKPSLYAAFGNKEQLFLKAIELYEQRPCAFF
YPALEQKTAYLVVESMLLGAASSLVDKSHPQGCLIVQGALTCSEAGQAIKDTLINRRRDGEIALCERLQRAKDEGDLPAD
AEPLLLARYVGTVLQGMAVQATSGICPNELRKVAELVLANFPRNDES

Sequences:

>Translated_207_residues
MMSTVTQTPCVGRPRAFDTDDALAKALEVFWRKGFEGTSLTDLTQAMGINKPSLYAAFGNKEQLFLKAIELYEQRPCAFF
YPALEQKTAYLVVESMLLGAASSLVDKSHPQGCLIVQGALTCSEAGQAIKDTLINRRRDGEIALCERLQRAKDEGDLPAD
AEPLLLARYVGTVLQGMAVQATSGICPNELRKVAELVLANFPRNDES
>Mature_207_residues
MMSTVTQTPCVGRPRAFDTDDALAKALEVFWRKGFEGTSLTDLTQAMGINKPSLYAAFGNKEQLFLKAIELYEQRPCAFF
YPALEQKTAYLVVESMLLGAASSLVDKSHPQGCLIVQGALTCSEAGQAIKDTLINRRRDGEIALCERLQRAKDEGDLPAD
AEPLLLARYVGTVLQGMAVQATSGICPNELRKVAELVLANFPRNDES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=201, Percent_Identity=33.3333333333333, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI87082397, Length=71, Percent_Identity=43.6619718309859, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22617; Mature: 22617

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSTVTQTPCVGRPRAFDTDDALAKALEVFWRKGFEGTSLTDLTQAMGINKPSLYAAFGN
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCC
KEQLFLKAIELYEQRPCAFFYPALEQKTAYLVVESMLLGAASSLVDKSHPQGCLIVQGAL
CHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
TCSEAGQAIKDTLINRRRDGEIALCERLQRAKDEGDLPADAEPLLLARYVGTVLQGMAVQ
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ATSGICPNELRKVAELVLANFPRNDES
HHCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMSTVTQTPCVGRPRAFDTDDALAKALEVFWRKGFEGTSLTDLTQAMGINKPSLYAAFGN
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCC
KEQLFLKAIELYEQRPCAFFYPALEQKTAYLVVESMLLGAASSLVDKSHPQGCLIVQGAL
CHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
TCSEAGQAIKDTLINRRRDGEIALCERLQRAKDEGDLPADAEPLLLARYVGTVLQGMAVQ
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ATSGICPNELRKVAELVLANFPRNDES
HHCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]